Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00342 ATGAAGAATATTCTTAAGAAGTTTCAGATAATGTCTAAGAAATCAGAAAATGAACAAGGGTTTTCTTCATTAGAGGGAAACAAGTCCAATCATGGTTCAATTTCATCTTCTAGGAAGCTTAGTAGGAAGAGTCATAGTTCTGCATCTTTGAGCCAAGGAAAGGTTGAGAGGATGGAACCATCTGAGGCAGTGAGAAATGTTGATTTGAGTGTTGTTTCGGATTCGGGTAGGCGCGATTCTGGTTGTCGAGAAAAGGCTTCCACGGATCCGGAAGTAGAGGAAGAGTATCAATTGAAGCTGGCTTTAGAGATGAGTGCTAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATTAGTTTGGGGTCTTGTGATCCGGATAATACACCGGCGGAAATTGTGGCATACAGATATTGGAATTACAATGCTCTTGGTTATGACGACAAAGTCATGGATGGATTCTACGATCTGTATGGGATATTAACCGAGTCAAACGCAGCAAGAATGCCTTCCCTTATAGATCTTCAAGGAAGACCGATCTCAGGTAATGTCACATGGGAAGCTGTCTTAGTCAATAGGGCTGCTGATTCTAATTTGTTGAAACTTGAGCAGAAAGCACTCGAGCTGACCGTCGAATCGAGATGTGGTTCTGAAGTAGTTATAGATACGAATTTGGCTCACAAGCTTGCAGTATTTGTGGCTGATTATATGGGTGGACCAGTCGGAAATCCTGAAAGCATGTCAAAAGCATGGAGAAGTCTTAGTTATAGTCTGAAAACAACTCTTGGTAGCATGGTTTTGCCACTTGGTTCTTTGACTATTGGTTTAGCTCGGCATCGCGCGTTGTTATTTAAGGTTCTAGCTGATAGATTGAGTATCTCGTCGCGGTTGGTGAAAGGACAGCAATATACAGGTTCTGATGATGTGGCAATAAACTTCGTCAAGATTGATGGAAGGGAGTATATTGTTGATCTAATGGCAGACCCTGGAACTCTTATTCCATCTGACGCTACTGGATCGCATATTGAGTATGATGCATCCTTTTTTGAGGCAAGCCCTTCATCAAGAGACCTCGATTCGTCTCGTGTAGCATCATCTAGCAGTGGAGTTGGAAGTTCATCTGAAGAAACTTCGGATGTTGGAATGTCGGGCAGAGGAAACAGATCAAAACATCACCATGTTAAGAAGGTTAATTCATATGTGCATTCAAGATCATCTTCTTGGAGTGAAGGGATCGGTTCCTCTGCCGTAAACCGAATGAAAGCCAGAAACGTTTCGCAATTTATGATCGATACTACCAAGGAAAATCCTCACTTGGCTAAAAAACTTCACGATGTTTTACTCGAAAGTGGTATTGTTCCTCCTCCAAATTTATTTTCTGACATTTATCACGAAGAATCTGTTTTCTCAACGAAAGTAAAAGAACATAAACAAGAAAGTGAACATCGAGAAATGGAATTCGATGATAGTCTCGGTCCTGCTAGATTTAAGCTTGTAGAAGGTTTAGGAACCAATCTTCCTCTTCATACAAAAGAAGATGTTGGAAAATTTATACCAAGTCAGGTAAAATACGGGAAAAAGATGCCAGCTGCTGCAGCGGCAGCCGCAGCAGCCGCAGTTGTTGCATCTTCTATGGTAGTTGCTGTGGCAAGGTCAAACACCGACTCCAACATCGAGCTTTCAGTCTCAGCAGCTGCTACTGCTGCAGCTGTAGTAGCAGCTACTGCTGCAGTTAACAAGTATGAGCCGAGCAATCGAAGTGACGCGGATACCGAAAGTTCTGGAACGAATTTGGGAAGATCTGGAAGCTCAGTTGTTAGTAATGACAGTACGAAATCTGATTGTTCTTTAGACGAAGTTGCTGAGTATGAAATTCCGTGGGAGGAAATCACACTCGGTGAACGTATTGGACTTGGATCTTATGGAGAGGTGTATCGCGGAGAATGGCGAGGAACTGAAGTTGCTGTAAAGAGGTTTCTAAATCAAGATATATCTGGTGAAGCACTTGAAGAATTCATTAGTGAGGTCAGAATAATGAAAAGATTGAGGCATCCAAATGTGGTTCTCTTCATGGGAGCTGTAATCCGACCTCCCAATCTTTCGATTGTTACTGAATTTCTACCTAGAGGAAGCTTGTATAGATTAATTCATCGGCCAAACAATCAATTAGATGAACGAAAGCGTTTGAGAATGGCCCTTGATACCGCTCGAGGAATGAACTATTTGCACAACTGCAGTCCAGTGATAGTACATCGCGATTTGAAGTCTCCGAATCTTCTTGTTGATAAAAATTGGGTTGTAAAGGTGTGTGATTTTGGCTTATCACGTATGAAGCATAGTACATTCCTTTCTTCCAGATCAACTGCAGGCACGGCCGAGTGGATGGCTCCCGAAATGTTGAGAAATGAACCGTCAAATGAAAAGTGTGATGTCTATAGCTTTGGGGTCATATTATGGGAGCTATCTACTTTGCAGCAACCTTGGAGAGGTATGAATTCCATGCAAGTTGTTGGTGCCGTGGGTTTCCAATACCGCCGTCTTGACATTCCAGACGACATGGATCCTGCCATTGCCGATATTATCAGAAAATGCTGGCAGACAGATCCTAAAGAAAGACCTACATTTGCTGAGATATTGGCAGCTCTAAAGCCGTTACAGAAGCCAAACGTCGGTTCTCAAGTGCCTCGACCGACTGTGTCCGGCAGGCACAGAAAAGATCAATCATCTGCTGCAGAAAGATAG 2748 0.4283 MKNILKKFQIMSKKSENEQGFSSLEGNKSNHGSISSSRKLSRKSHSSASLSQGKVERMEPSEAVRNVDLSVVSDSGRRDSGCREKASTDPEVEEEYQLKLALEMSAKEDPEAVQIEAVKQISLGSCDPDNTPAEIVAYRYWNYNALGYDDKVMDGFYDLYGILTESNAARMPSLIDLQGRPISGNVTWEAVLVNRAADSNLLKLEQKALELTVESRCGSEVVIDTNLAHKLAVFVADYMGGPVGNPESMSKAWRSLSYSLKTTLGSMVLPLGSLTIGLARHRALLFKVLADRLSISSRLVKGQQYTGSDDVAINFVKIDGREYIVDLMADPGTLIPSDATGSHIEYDASFFEASPSSRDLDSSRVASSSSGVGSSSEETSDVGMSGRGNRSKHHHVKKVNSYVHSRSSSWSEGIGSSAVNRMKARNVSQFMIDTTKENPHLAKKLHDVLLESGIVPPPNLFSDIYHEESVFSTKVKEHKQESEHREMEFDDSLGPARFKLVEGLGTNLPLHTKEDVGKFIPSQVKYGKKMPAAAAAAAAAAVVASSMVVAVARSNTDSNIELSVSAAATAAAVVAATAAVNKYEPSNRSDADTESSGTNLGRSGSSVVSNDSTKSDCSLDEVAEYEIPWEEITLGERIGLGSYGEVYRGEWRGTEVAVKRFLNQDISGEALEEFISEVRIMKRLRHPNVVLFMGAVIRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDTARGMNYLHNCSPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEMLRNEPSNEKCDVYSFGVILWELSTLQQPWRGMNSMQVVGAVGFQYRRLDIPDDMDPAIADIIRKCWQTDPKERPTFAEILAALKPLQKPNVGSQVPRPTVSGRHRKDQSSAAER 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00342 915 Pfam Protein tyrosine and serine/threonine kinase 632 883 IPR001245 GO:0004672|GO:0006468
Vivi4g00342 915 MobiDBLite consensus disorder prediction 901 915 - -
Vivi4g00342 915 MobiDBLite consensus disorder prediction 888 915 - -
Vivi4g00342 915 MobiDBLite consensus disorder prediction 355 386 - -
Vivi4g00342 915 SUPERFAMILY Protein kinase-like (PK-like) 612 883 IPR011009 -
Vivi4g00342 915 CDD STKc_MAP3K-like 638 884 - -
Vivi4g00342 915 FunFam Serine/threonine-protein kinase CTR1 711 894 - -
Vivi4g00342 915 MobiDBLite consensus disorder prediction 14 54 - -
Vivi4g00342 915 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 352 889 - -
Vivi4g00342 915 Gene3D Phosphorylase Kinase; domain 1 625 709 - -
Vivi4g00342 915 ProSiteProfiles Protein kinase domain profile. 632 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00342 915 MobiDBLite consensus disorder prediction 354 414 - -
Vivi4g00342 915 MobiDBLite consensus disorder prediction 583 614 - -
Vivi4g00342 915 Gene3D Transferase(Phosphotransferase) domain 1 711 895 - -
Vivi4g00342 915 FunFam Serine/threonine-protein kinase isoform 1 623 710 - -
Vivi4g00342 915 ProSitePatterns Protein kinases ATP-binding region signature. 638 659 IPR017441 GO:0005524
Vivi4g00342 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Vivi4g00342 915 Pfam Ethylene-responsive protein kinase Le-CTR1 133 335 - -
Vivi4g00342 915 MobiDBLite consensus disorder prediction 1 90 - -
Vivi4g00342 915 PRINTS Tyrosine kinase catalytic domain signature 792 802 IPR001245 GO:0004672|GO:0006468
Vivi4g00342 915 PRINTS Tyrosine kinase catalytic domain signature 811 833 IPR001245 GO:0004672|GO:0006468
Vivi4g00342 915 PRINTS Tyrosine kinase catalytic domain signature 745 763 IPR001245 GO:0004672|GO:0006468
Vivi4g00342 915 PRINTS Tyrosine kinase catalytic domain signature 706 719 IPR001245 GO:0004672|GO:0006468
Vivi4g00342 915 PRINTS Tyrosine kinase catalytic domain signature 855 877 IPR001245 GO:0004672|GO:0006468
Vivi4g00342 915 SMART serkin_6 632 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00342 Vivi-Chr4 7790416 7795976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00342 1 902 MAP Kinase Kinase Kinase AT1G73660 56.287 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi4g00342 PK_Tyr_Ser-Thr 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00342 - - vvo:131594415 1706.81