Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00336 ATGGGTATCAAAGATCTTCTCAGATTCATGAAACCTTACGTTGAACCCATTCACATCAAGAACTACGCTGGCAAACGTGTGGGTATTGATGCATATTCATGGCTTCATAAAGGAGCTTATTCGTGTAGTATGGAACTTTGTCTTGATTCTGATAGTGAAAGGAAATTGCGGTACATTGAATACTTTATGCATAGAGTGAACCTGCTTCGTTACTATAAAGTAACACCGGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAATCTGCAACTGAGAAAGAGAGGAACAAGAAAAGAAATGCTTATCATGATTTGGCAATGGCTAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCAGAGCTTTTTCAGAGAGCAGTGAATGTTACTCCTCTTATGGCACATAAGCTAATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACTTGTCCAACCTCGAGACAGAAAAAGGCGGTATTGCAGCGGTGATTACGGAAGATAGTGATCTGATAGCTTATGGTTGTCCAGCTGTTATGTTTAAGATGGACCGTGAAGGGAATGGTGAAAGAATAGAATTAGAGAAGGTTTTTTCCGCCGAATCTTGTAAACCTTCATTTCGGAGTTTTGATATGAAGCTTTTCACAGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGCATTGGTGTTGCTCGCGCCCATGCCTTAGTTTCAAAGTATAAGAATATCGATCGTGTCTTGTCTGTTCTTAAGTTTGAGAAAGGCGATCAAATGCCCGAAGATTACGCCAAATCCTTCAAAGACGCATTGGCTGTATTTCAGCATGCTCGAATATATGATATCAATACTAAAGAGCTCAAGCACATGAAGCCTCTTCCAGAAAATTTTCTCGAGTCACTTGACGAAAACCTCGATTTTTTGGGACCCGAAATTCCCTCGACTATAGTCAAAGGAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAAGCTTTTGATAAGTCTGAAAATTCGAGACTTCCTTTACACCCCATAGATTCTCAAACCATCGGTCAACTCAAAAAACGTGAAGTTTCGATACCGATTAAGCAGGAAAACTGTTTTTCAGTCTTTGGCTCTCAAAACATCAATCATGCCATTACAAGGCTCTCAGATAAAGAAAAATATTCAAATGAAGCATTGGCACTTCAGAAACTAATCATGCCATTAGGAACAAATGAAACAACAAAAAAGACCATTGCATGTGGTAAAACTCCTTTGAAGGTTCCTAACAACAATCCTTTTAGGATAAGGAAACATAAGGAGGAGGAAAAAGTTGAAGAAATTTCCATTGTAAGCAGTGTTGAATATATCGGTCTTGATGATTATATGTCAGTGTCACCGAGTAACTCTCGAGAAAAAGTGTCTAAGAATGAAGAAATTTCTGTTGTCAGCAGTGTGGAATATATTGATCTTGATAACTACACGTCACCACAAGAAAAAGGGTCTGCAAATTTCGCAAGGAAAAGGAAATTCGAGAATGTTTGCTTAGATAAAGTAGAAGCGAAAGACGAAGAGGTTTCGGGAGTGACTGAAGAGGAATGCTCGAATGCGGAGTCTCAAGAAAGTGTTAAGTCCAAGGTTAAGAAATCGAAGATAAGTAACTCCAAGAAAAAGGGGAGTAACATTAGAACTATTCTGAATTTCTTTTCAAGAGTGTAA 1746 0.3872 MGIKDLLRFMKPYVEPIHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKSATEKERNKKRNAYHDLAMAKLKEGNVNAASELFQRAVNVTPLMAHKLIQTLKSENIEFVVAPYEADAQLAYLSNLETEKGGIAAVITEDSDLIAYGCPAVMFKMDREGNGERIELEKVFSAESCKPSFRSFDMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYKNIDRVLSVLKFEKGDQMPEDYAKSFKDALAVFQHARIYDINTKELKHMKPLPENFLESLDENLDFLGPEIPSTIVKGIAEGNLNPSTKEAFDKSENSRLPLHPIDSQTIGQLKKREVSIPIKQENCFSVFGSQNINHAITRLSDKEKYSNEALALQKLIMPLGTNETTKKTIACGKTPLKVPNNNPFRIRKHKEEEKVEEISIVSSVEYIGLDDYMSVSPSNSREKVSKNEEISVVSSVEYIDLDNYTSPQEKGSANFARKRKFENVCLDKVEAKDEEVSGVTEEECSNAESQESVKSKVKKSKISNSKKKGSNIRTILNFFSRV 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00336 581 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Vivi4g00336 581 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Vivi4g00336 581 FunFam exonuclease 1 218 291 - -
Vivi4g00336 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Vivi4g00336 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Vivi4g00336 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vivi4g00336 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Vivi4g00336 581 Gene3D - 1 213 - -
Vivi4g00336 581 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Vivi4g00336 581 CDD H3TH_FEN1-like 225 295 - -
Vivi4g00336 581 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Vivi4g00336 581 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Vivi4g00336 581 SMART xpgineu 141 213 IPR006086 GO:0004518
Vivi4g00336 581 MobiDBLite consensus disorder prediction 533 566 - -
Vivi4g00336 581 FunFam Exonuclease 1, putative 1 214 - -
Vivi4g00336 581 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Vivi4g00336 581 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Vivi4g00336 581 Gene3D - 218 291 - -
Vivi4g00336 581 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Vivi4g00336 581 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 559 IPR006084 -
Vivi4g00336 581 SMART xpgn3 1 102 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00336 Vivi-Chr4 7699169 7702536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00336 1 391 Core DNA Replication Machinery Family AT5G26680 23.775 8.83e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00336 K10746 - gmx:100817932 766.533