Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00331 ATGACACCACGCACGGATGACCTAATCCCCACCGACGACGATGACAGCGACGACGACGGTCTCAAAGAAGACATGGCCGCCGTCGCGCGAGCCTGTGCTTCTGATGATGATGAAGATGACTTGGAAACAGTTCGCGCCATCTTCAAACGGTTTTCCGCTTATGATAGAGGTGGAAGGGAAGCATGGGCTGAGGAGGATCAGACCCCGAGTTTAATTGCTGAGAAGGATGTTGTCAATAGCTCTATTTCTGATAGCTCAGATGCTGGTGAATTGTGTCCTGATTCTCAATGTCTTGATAATGACACCAATTTGCTGGTTGATACATGTGGTTATGAGGAGACTTATGAAAAAGATGCTGGGTTGGCTTCTCAAGTATTGAATGAAAGATCAAGATTTCCTCCGTCGGCTCAAGCTTTTGTGGATGCCCTCTCGAAGAATAGAGCTCTCCAGCAATTTCTTAGAAGTAAGTTGATTGAAATTGAAGCAAAAATTGAAGTAAACAACAAGCTAAGGGAAAAAGTTAAAATCCTTAAGGATTTCCAGGTTTCATGCAATAGAAGAACGGGAACTGCTCTATCACTGAAAAAGGATCCGCGTGTGCAGTTAATATCATCCAAGAAGTCTCTTGCTACAAAAAAGTCAAAGAACAATAATAAGAAGGTGTCTGCATTGTGTTATGGCCCAGATGAGAATTCTCGTGTTGCTCACTATAAGATGGTATTGGAAAGATTTCCACTTTCATTGGATCGAAAAAAGTGGTCAAATAAGGAAAGGGAGAAACTTTCAATAGGAATTAAGCAACAATTCCAAGAAACAGTGTATCAAATTTCAGTAGATAGAATGGGTTCAGAGTGCTCACCGGGAGACATAATTGATTCATTTAAAGATCTTGAAATCACACCAGCAAGGATTAGAGCATTTTTACCTAAAGTTAAATGGGATTCATTGGCTTCTATGCATATTACTGGCCGTACTGGTGCTGAATGTGAATCAAGGTGGTTAAATTGTGAAGACCCTTTGATCAATCATGGCTCATGGACTGGTGAGGAGGATAGGTCTCTTTTGATTACTGTTCAAGAGACGGGCATCAGGAATTGGTTTAACATTGCTGCATCATTGGCCACAAACAGGACTCCATTTCAATGCTTGGCACGATACCAAAGGAGCTTAAATTCTTCGATGATAAATAGTGAATGGACCGAGGAAGAAGACACTCAACTTTGTTCTGCTGTTGCATATTTTGGTGAGTCTAATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGGACGGGAACTCAATGCTCAAATAGATGGAAAAAATCAATTTGTCCTGTGAGGAAAGGAAGCTTTACACCCGAGGAGGATGAACGCCTTACAATAGCAGTTGCGCTGTTTGGAAGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCAGGATTCAATCTCAGTGTAGAGAAAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATCACCAAGTATGGATATTGCTGGTCTAAGGTGGCTGAAGATGTACCTCCCCGCACTGATTCTCAATGTCGGAAGAGATGGAAGGTGATATGTCCTGAACAAGTTCCTTTGCTGCAAGAAGCAAGAAAGAGGCAAAGGTCTCTTCTTGCCAGGAACTTTGTCGATCGAGAATCAGAACGTCCAGCTCTTACACTCAATGACTTCATTCCTTTACAAATGTTAGTTCCACCATCGGATGTTGATGCTGAGAAACTCCAAAGGAAGCGGAAGAGAAAGTCGCGTGGCATTTGCAAGGAAGAGAGGTCCAAAAAAAATGGAAAGGAGACTGAACTTTGTACCGGGGAAGCACAAGGTGTAGAGCCCAAGAAAGAGAGGCCTAAAAGACATGCAAAAAAGAAATCATTTTATCCCGAGGGTGTAGAGGATATAGTTCCCAAGAAAGCGAAGCCCAAAAGACATTTGAAGAAGGCTCGAATTTGTCCGGAGGAAGTACAGTATATAGCAGCATATAGTGACATGGTCAAGACTTCTGGTGGTGGTGGTGTTCCATTCTCTGCACCAGGCAATGTTCCCAAGAAAAGGAGATCTAAAAGAGGTCCTAAAACGGCTCAGCCCAAGGAAGTAGATAATATAGCATGTAGCGACGAGGTCAAGACCTCTATCGAGAGTTCAGAAAGTCAAGATGGAGACAACGTAACACTTGCATGCTTTTTGCGCAACAAATCAAAGAAGAAACTATCTAAGTCTACCAAAAATGCTAGCCAGGGTTTGACTTCCTCTAGGACAAAAACTGTATCTAAGCAGGTTGAAAATCAAATCCCATCTGGTGAGCAAGATAGACTGTCTATGTCACGTGGTATTGATGGAGCTAAAGATTTATCAATGCAAACAGAAGATGATTCTAGCAGACAAGTTAGAAAACCAGAAGGTACAAATGCAACTAGAAAATCAGAGGGTGCACACAATTTGAATGGTGGTGGCGATGCTATACCTCTTAAGTTCTATGTTAGAAAGAAAACAAAGAAATTGAGTCAAGCTACTGAAGAACGTTGTACTTGCTCTCCTTCCAAAATGAAAAAGGGATCTACATTTCTCCATGGAAACAAGCCAACCATCATTTCTAACGACAGTGAACCATCGGTGTCAAGAGTTGTTGAAGAGGAGAGTGTTTTACATGGTGGTGTGGTTGAAGCTGAACCAACAAACGTCAATCTTGTCGAAGAAGAGACCGTTCTGCATGGTGGTGTGGCTGAAGCTGAACCCACAAGCATCAATGTTGTCGAAGAAGAGACTGTTCTGCATGGTGGTGTGGCTGAAGCTGAACCCACAAACATCAATATTGTCGAAGAAGATACTGCTCTGCATTGTGGTGTGGCTGATGCCGAATCCCCAACCGTCAATGTGGTTGAAGAGGAGACTATCATGCATGGTGGTGTGGCTGATGCTGAGCCCACAAACATGAAAGCGGAAGAAAATGAACCGCTGCTTTCCTTCCTGCAAAACAAGACAAGGAAATGGCAAAGACGGCACAATATTCGGAAATGA 3081 0.4268 MTPRTDDLIPTDDDDSDDDGLKEDMAAVARACASDDDEDDLETVRAIFKRFSAYDRGGREAWAEEDQTPSLIAEKDVVNSSISDSSDAGELCPDSQCLDNDTNLLVDTCGYEETYEKDAGLASQVLNERSRFPPSAQAFVDALSKNRALQQFLRSKLIEIEAKIEVNNKLREKVKILKDFQVSCNRRTGTALSLKKDPRVQLISSKKSLATKKSKNNNKKVSALCYGPDENSRVAHYKMVLERFPLSLDRKKWSNKEREKLSIGIKQQFQETVYQISVDRMGSECSPGDIIDSFKDLEITPARIRAFLPKVKWDSLASMHITGRTGAECESRWLNCEDPLINHGSWTGEEDRSLLITVQETGIRNWFNIAASLATNRTPFQCLARYQRSLNSSMINSEWTEEEDTQLCSAVAYFGESNWQSVASVLERRTGTQCSNRWKKSICPVRKGSFTPEEDERLTIAVALFGRKWNQIAKYVPGRIQSQCRERYLNSLDPSLKWGGWTEEEDLRLEAAITKYGYCWSKVAEDVPPRTDSQCRKRWKVICPEQVPLLQEARKRQRSLLARNFVDRESERPALTLNDFIPLQMLVPPSDVDAEKLQRKRKRKSRGICKEERSKKNGKETELCTGEAQGVEPKKERPKRHAKKKSFYPEGVEDIVPKKAKPKRHLKKARICPEEVQYIAAYSDMVKTSGGGGVPFSAPGNVPKKRRSKRGPKTAQPKEVDNIACSDEVKTSIESSESQDGDNVTLACFLRNKSKKKLSKSTKNASQGLTSSRTKTVSKQVENQIPSGEQDRLSMSRGIDGAKDLSMQTEDDSSRQVRKPEGTNATRKSEGAHNLNGGGDAIPLKFYVRKKTKKLSQATEERCTCSPSKMKKGSTFLHGNKPTIISNDSEPSVSRVVEEESVLHGGVVEAEPTNVNLVEEETVLHGGVAEAEPTSINVVEEETVLHGGVAEAEPTNINIVEEDTALHCGVADAESPTVNVVEEETIMHGGVADAEPTNMKAEENEPLLSFLQNKTRKWQRRHNIRK 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00331 1026 CDD SANT 501 540 IPR001005 -
Vivi4g00331 1026 SUPERFAMILY Homeodomain-like 472 543 IPR009057 -
Vivi4g00331 1026 Pfam Myb-like DNA-binding domain 346 407 - -
Vivi4g00331 1026 Gene3D - 444 498 - -
Vivi4g00331 1026 ProSiteProfiles Myb-like domain profile. 338 390 IPR001005 -
Vivi4g00331 1026 Gene3D - 499 544 - -
Vivi4g00331 1026 SMART sant 446 494 IPR001005 -
Vivi4g00331 1026 SMART sant 497 545 IPR001005 -
Vivi4g00331 1026 SMART sant 342 392 IPR001005 -
Vivi4g00331 1026 SMART sant 249 339 IPR001005 -
Vivi4g00331 1026 SMART sant 395 444 IPR001005 -
Vivi4g00331 1026 MobiDBLite consensus disorder prediction 728 745 - -
Vivi4g00331 1026 ProSiteProfiles Myb-like domain profile. 493 543 IPR001005 -
Vivi4g00331 1026 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 12 910 - -
Vivi4g00331 1026 SUPERFAMILY Homeodomain-like 394 488 IPR009057 -
Vivi4g00331 1026 ProSiteProfiles Myb-like domain profile. 446 492 IPR001005 -
Vivi4g00331 1026 MobiDBLite consensus disorder prediction 761 791 - -
Vivi4g00331 1026 MobiDBLite consensus disorder prediction 594 650 - -
Vivi4g00331 1026 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 399 440 IPR017930 -
Vivi4g00331 1026 SUPERFAMILY Homeodomain-like 319 382 IPR009057 -
Vivi4g00331 1026 MobiDBLite consensus disorder prediction 1 22 - -
Vivi4g00331 1026 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 445 492 IPR017930 -
Vivi4g00331 1026 CDD SANT 345 390 IPR001005 -
Vivi4g00331 1026 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 493 547 IPR017930 -
Vivi4g00331 1026 ProSiteProfiles Myb-like domain profile. 391 442 IPR001005 -
Vivi4g00331 1026 CDD SANT 449 492 IPR001005 -
Vivi4g00331 1026 MobiDBLite consensus disorder prediction 690 839 - -
Vivi4g00331 1026 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 338 394 IPR017930 -
Vivi4g00331 1026 Gene3D - 390 441 - -
Vivi4g00331 1026 Gene3D - 340 389 - -
Vivi4g00331 1026 MobiDBLite consensus disorder prediction 804 826 - -
Vivi4g00331 1026 Pfam Myb-like DNA-binding domain 447 490 IPR001005 -
Vivi4g00331 1026 Pfam Myb-like DNA-binding domain 500 540 IPR001005 -
Vivi4g00331 1026 CDD SANT 398 440 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00331 Vivi-Chr4 7461382 7469104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00331 130 643 MYB-Related Transcription Factor Family AT3G18100 49.553 6.34e-169 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g00331 Myb_DNA-bind_6 6.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00331 K09422 - gmx:100818474 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00331 4 7461382 7469104 Vivi4g00331 4 7461382 7469104 ECH