Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00330 ATGACACCACGCACGGATGACCTAATCCCCACCGACGACGATGACAGCGACGACGACGGTCTCAAAGAAGACATGGCCGCCGTCGCGCGAGCCTGTAAGTACAAAATAGATGAAATTTCATCTCAAGAAGATCCTCTTTTGGCTTCTGGAGATGAAATTCCGTATGAAAAAGATCCTCTTTTGGCTTCCGGCGACGCTATTGTCCCATTCACTGCCACTGCCGACTCTGACTCTGATGGAGAGAGTGACCGTGAATGTCTCAATAGAGTTAAGAATCTCTGTAAGGATATTGATTCTGTTCCTCATCTGCCGCCGATGACAGGTGCTTCTGATGATGATGAAGATGACTTGGAAACAGTTCGCGCCATCTTCAAACGGTTTTCCGCTTATGATAGAGGTGGAAGGGAAGCATGGGCTGAGGAGGATCAGACCCCGAGTTTAATTGCTGAGAAGGATGTTGTCAATAGCTCTATTTCTGATAGCTCAGATGCTGGTGAATTGTGTCCTGATTCTCAATGTCTTGATAATGACACCAATTTGCTGGTTGATACATGTGGTTATGAGGAGACTTATGAAAAAGATGCTGGGTTGGCTTCTCAAGTATTGAATGAAAGATCAAGATTTCCTCCGTCGGCTCAAGCTTTTGTGGATGCCCTCTCGAAGAATAGAGCTCTCCAGCAATTTCTTAGAAGTAAGTTGATTGAAATTGAAGCAAAAATTGAAGTAAACAACAAGCTAAGGGAAAAAGTTAAAATCCTTAAGGATTTCCAGGTTTCATGCAATAGAAGAACGGGAACTGCTCTATCACTGAAAAAGGATCCGCGTGTGCAGTTAATATCATCCAAGAAGTCTCTTGCTACAAAAAAGTCAAAGAACAATAATAAGAAGGTGTCTGCATTGTGTTATGGCCCAGATGAGAATTCTCGTGTTGCTCACTATAAGATGGTATTGGAAAGATTTCCACTTTCATTGGATCGAAAAAAGTGGTCAAATAAGGAAAGGGAGAAACTTTCAATAGGAATTAAGCAACAATTCCAAGAAACAGTGTATCAAATTTCAGTAGATAGAATGGGTTCAGAGTGCTCACCGGGAGACATAATTGATTCATTTAAAGATCTTGAAATCACACCAGCAAGGATTAGAGCATTTTTACCTAAAGTTAAATGGGATTCATTGGCTTCTATGCATATTACTGGCCGTACTGGTGCTGAATGTGAATCAAGGTGGTTAAATTGTGAAGACCCTTTGATCAATCATGGCTCATGGACTGGTGAGGAGGATAGGTCTCTTTTGATTACTGTTCAAGAGACGGGCATCAGGAATTGGTTTAACATTGCTGCATCATTGGCCACAAACAGGACTCCATTTCAATGCTTGGCACGATACCAAAGGAGCTTAAATTCTTCGATGATAAATAGTGAATGGACCGAGGAAGAAGACACTCAACTTTGTTCTGCTGTTGCATATTTTGGTGAGTCTAATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGGACGGGAACTCAATGCTCAAATAGATGGAAAAAATCAATTTGTCCTGTGAGGAAAGGAAGCTTTACACCCGAGGAGGATGAACGCCTTACAATAGCAGTTGCGCTGTTTGGAAGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCAGGATTCAATCTCAGTGTAGAGAAAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATCACCAAGTATGGATATTGCTGGTCTAAGGTGGCTGAAGATGTACCTCCCCGCACTGATTCTCAATGTCGGAAGAGATGGAAGGTGATATGTCCTGAACAAGTTCCTTTGCTGCAAGAAGCAAGAAAGAGGCAAAGGTCTCTTCTTGCCAGGAACTTTGTCGATCGAGAATCAGAACGTCCAGCTCTTACACTCAATGACTTCATTCCTTTACAAATGTTAGTTCCACCATCGGATGTTGATGCTGAGAAACTCCAAAGGAAGCGGAAGAGAAAGTCGCGTGGCATTTGCAAGGAAGAGAGGTCCAAAAAAAATGGAAAGGAGACTGAACTTTGTACCGGGGAAGCACAAGGTGTAGAGCCCAAGAAAGAGAGGCCTAAAAGACATGCAAAAAAGAAATCATTTTATCCCGAGGGTGTAGAGGATATAGTTCCCAAGAAAGCGAAGCCCAAAAGACATTTGAAGAAGGCTCGAATTTGTCCGGAGGAAGTACAGTATATAGCAGCATATAGTGACATGGTCAAGACTTCTGGTGGTGGTGGTGTTCCATTCTCTGCACCAGGCAATGTTCCCAAGAAAAGGAGATCTAAAAGAGGTCCTAAAACGGCTCAGCCCAAGGAAGTAGATAATATAGCATGTAGCGACGAGGTCAAGACCTCTATCGAGAGTTCAGAAAGTCAAGATGGAGACAACGTAACACTTGCATGCTTTTTGCGCAACAAATCAAAGAAGAAACTATCTAAGTCTACCAAAAATGCTAGCCAGGGTTTGACTTCCTCTAGGACAAAAACTGTATCTAAGCAGGTTGAAAATCAAATCCCATCTGGTGAGCAAGATAGACTGTCTATGTCACGTGGTATTGATGGAGCTAAAGATTTATCAATGCAAACAGAAGATGATTCTAGCAGACAAGTTAGAAAACCAGAAGGTACAAATGCAACTAGAAAATCAGAGGGTGCACACAATTTGAATGGTGGTGGCGATGCTATACCTCTTAAGTTCTATGTTAGAAAGAAAACAAAGAAATTGAGTCAAGCTACTGAAGAACGTTGTACTTGCTCTCCTTCCAAAATGAAAAAGGGATCTACATTTCTCCATGGAAACAAGCCAACCATCATTTCTAACGACAGTGAACCATCGGTGTCAAGAGTTGTTGAAGAGGAGAGTGTTTTACATGGTGGTGTGGTTGAAGCTGAACCAACAAACGTCAATCTTGTCGAAGAAGAGACCGTTCTGCATGGTGGTGTGGCTGAAGCTGAACCCACAAGCATCAATGTTGTCGAAGAAGAGACTGTTCTGCATGGTGGTGTGGCTGAAGCTGAACCCACAAACATCAATATTGTCGAAGAAGATACTGCTCTGCATTGTGGTGTGGCTGATGCCGAATCCCCAACCGTCAATGTGGTTGAAGAGGAGACTATCATGCATGGTGGTGTGGCTGATGCTGAGCCCACAAACATGAAAGCGGAAGAAAATGAACCGCTGCTTTCCTTCCTGCAAAACAAGACAAGGAAATGGCAAAGACGGCACAATATTCGGAAATGA 3309 0.4273 MTPRTDDLIPTDDDDSDDDGLKEDMAAVARACKYKIDEISSQEDPLLASGDEIPYEKDPLLASGDAIVPFTATADSDSDGESDRECLNRVKNLCKDIDSVPHLPPMTGASDDDEDDLETVRAIFKRFSAYDRGGREAWAEEDQTPSLIAEKDVVNSSISDSSDAGELCPDSQCLDNDTNLLVDTCGYEETYEKDAGLASQVLNERSRFPPSAQAFVDALSKNRALQQFLRSKLIEIEAKIEVNNKLREKVKILKDFQVSCNRRTGTALSLKKDPRVQLISSKKSLATKKSKNNNKKVSALCYGPDENSRVAHYKMVLERFPLSLDRKKWSNKEREKLSIGIKQQFQETVYQISVDRMGSECSPGDIIDSFKDLEITPARIRAFLPKVKWDSLASMHITGRTGAECESRWLNCEDPLINHGSWTGEEDRSLLITVQETGIRNWFNIAASLATNRTPFQCLARYQRSLNSSMINSEWTEEEDTQLCSAVAYFGESNWQSVASVLERRTGTQCSNRWKKSICPVRKGSFTPEEDERLTIAVALFGRKWNQIAKYVPGRIQSQCRERYLNSLDPSLKWGGWTEEEDLRLEAAITKYGYCWSKVAEDVPPRTDSQCRKRWKVICPEQVPLLQEARKRQRSLLARNFVDRESERPALTLNDFIPLQMLVPPSDVDAEKLQRKRKRKSRGICKEERSKKNGKETELCTGEAQGVEPKKERPKRHAKKKSFYPEGVEDIVPKKAKPKRHLKKARICPEEVQYIAAYSDMVKTSGGGGVPFSAPGNVPKKRRSKRGPKTAQPKEVDNIACSDEVKTSIESSESQDGDNVTLACFLRNKSKKKLSKSTKNASQGLTSSRTKTVSKQVENQIPSGEQDRLSMSRGIDGAKDLSMQTEDDSSRQVRKPEGTNATRKSEGAHNLNGGGDAIPLKFYVRKKTKKLSQATEERCTCSPSKMKKGSTFLHGNKPTIISNDSEPSVSRVVEEESVLHGGVVEAEPTNVNLVEEETVLHGGVAEAEPTSINVVEEETVLHGGVAEAEPTNINIVEEDTALHCGVADAESPTVNVVEEETIMHGGVADAEPTNMKAEENEPLLSFLQNKTRKWQRRHNIRK 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00330 1102 MobiDBLite consensus disorder prediction 670 726 - -
Vivi4g00330 1102 ProSiteProfiles Myb-like domain profile. 414 466 IPR001005 -
Vivi4g00330 1102 MobiDBLite consensus disorder prediction 830 915 - -
Vivi4g00330 1102 CDD SANT 421 466 IPR001005 -
Vivi4g00330 1102 CDD SANT 525 568 IPR001005 -
Vivi4g00330 1102 ProSiteProfiles Myb-like domain profile. 522 568 IPR001005 -
Vivi4g00330 1102 Pfam Myb-like DNA-binding domain 523 566 IPR001005 -
Vivi4g00330 1102 Pfam Myb-like DNA-binding domain 576 616 IPR001005 -
Vivi4g00330 1102 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 569 623 IPR017930 -
Vivi4g00330 1102 Coils Coil 1097 1102 - -
Vivi4g00330 1102 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 12 986 - -
Vivi4g00330 1102 MobiDBLite consensus disorder prediction 880 902 - -
Vivi4g00330 1102 SUPERFAMILY Homeodomain-like 395 458 IPR009057 -
Vivi4g00330 1102 Gene3D - 575 620 - -
Vivi4g00330 1102 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 475 516 IPR017930 -
Vivi4g00330 1102 SUPERFAMILY Homeodomain-like 470 564 IPR009057 -
Vivi4g00330 1102 SUPERFAMILY Homeodomain-like 548 619 IPR009057 -
Vivi4g00330 1102 CDD SANT 474 516 IPR001005 -
Vivi4g00330 1102 CDD SANT 577 616 IPR001005 -
Vivi4g00330 1102 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 521 568 IPR017930 -
Vivi4g00330 1102 ProSiteProfiles Myb-like domain profile. 467 518 IPR001005 -
Vivi4g00330 1102 Pfam Myb-like DNA-binding domain 422 483 - -
Vivi4g00330 1102 SMART sant 573 621 IPR001005 -
Vivi4g00330 1102 SMART sant 471 520 IPR001005 -
Vivi4g00330 1102 SMART sant 418 468 IPR001005 -
Vivi4g00330 1102 SMART sant 325 415 IPR001005 -
Vivi4g00330 1102 SMART sant 522 570 IPR001005 -
Vivi4g00330 1102 Gene3D - 466 517 - -
Vivi4g00330 1102 Gene3D - 416 465 - -
Vivi4g00330 1102 ProSiteProfiles Myb-like domain profile. 569 619 IPR001005 -
Vivi4g00330 1102 MobiDBLite consensus disorder prediction 1 21 - -
Vivi4g00330 1102 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 414 470 IPR017930 -
Vivi4g00330 1102 Gene3D - 520 574 - -
Vivi4g00330 1102 MobiDBLite consensus disorder prediction 837 867 - -
Vivi4g00330 1102 MobiDBLite consensus disorder prediction 766 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00330 Vivi-Chr4 7461382 7469104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00330 206 719 MYB-Related Transcription Factor Family AT3G18100 49.553 5.62e-168 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g00330 Myb_DNA-bind_6 7.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00330 K09422 - gmx:100818474 967.222