Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00328 ATGGATATTGAGGAGGACATCCGATCCTTACAGCTTGAGTCGGCAGACATAGCAGAAGACAGCAATGGGGTTGTAAGTCCAGATGATGGAAAGACAGAAGTCGAGGAATCTATTAATACAAATCAAGACGTTGAGGAACCTACTAATGCAAAAGAAGATCCTAAGCCGGAGGTTCAAGCACAATCTATTAAGACTGATATAAAAGATAAAGAGGTTCCGCCGGTGCAAGATGAAGAGGACGAGGAGGTGGCTGTCAAAAGACACTTAAATGTTGTTTTTATTGGTCATGTGGATGCTGGTAAATCGACAACAGGAGGCCAAATACTTTTCCTCAGTGGTCAGGTCGATGAAAGGACTATCCAAAAATACGAGAAGGAAGCCAAGGACAAAAGTAGAGAGAGCTGGTATATGGCTTACATAATGGACACGAATGAGGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACGTCAAGGTTTACGATTTTGGATGCACCAGGTCATAAGAGTTATGTCCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTATTGGTAATCTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAAAAAGGTGGTCAAACCCGTGAACATGTTCAGCTTGCAAAAACACTGGGTGTGTCTAAGCTCGTTGTTGTTGTTAACAAAATGGACGATCCTACAGTGAAGTGGTCAAAAGAAAGGTATGATGAAATTGAATCGAAAATGACTCCATTTCTTAAGCAATCGGGTTACAATGTGAAGAAAGATGTCCTGTTTTTACCTATATCTGGGCTGATCGGAACAAACCTAAAAACAAGAATGGGTAAAAGCATTTGTCCATGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGACGCCATTGAAATTCCTCTACGAGATCCTAAAGCTCCTTTCAGGATGCCCATACTCGACAAATTCAAAGACATGGGTACTGTTGTTATGGGCAAAGTGGAATCTGGTAGTATTCGTGAGGGAGATTCCTTGTTGATTATGCCAAATAAGGATCATGTGAAAGTTGTTGCTATATTTATTGATGAGAATCGAGTTAAACGTGCTGGACCTGGTGAAAATTTACGGGTTAGAGTATCCGGTGTTGAAGAAGAGGACATATCATCTGGATTTATCTTGTCTAGTACTGCAAATCCAATACCAGCTGTAACAGAGTTTGTTGCTCAGTTGGCAATCCTTGAATTGCTAGACAATGCAATTTTTACTGCTGGGTACAAGGCTATCCTGCATGTCCACTCTGTAGTTGAAGAATGTGAGGTTATTGAGCTCATGCATCAAATTGATCCGAAGACAAAGAAGCCTATGAAAAAGAAAGTCCTCTTTGTGAAGAATGGTGCAGGTGTTGTATGTCGAATTCAGGTTAGTAACTCCATTTGCATAGAGAAATTCTCCGACTTTCCACAACTTGGGAGATTCACTCTTCGCACTGAAGGAAAAACTGTCGCCGTGGGAAAAGTCATGGGTTTTTAA 1539 0.4165 MDIEEDIRSLQLESADIAEDSNGVVSPDDGKTEVEESINTNQDVEEPTNAKEDPKPEVQAQSIKTDIKDKEVPPVQDEEDEEVAVKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETSRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVSKLVVVVNKMDDPTVKWSKERYDEIESKMTPFLKQSGYNVKKDVLFLPISGLIGTNLKTRMGKSICPWWDGPCLFEALDAIEIPLRDPKAPFRMPILDKFKDMGTVVMGKVESGSIREGDSLLIMPNKDHVKVVAIFIDENRVKRAGPGENLRVRVSGVEEEDISSGFILSSTANPIPAVTEFVAQLAILELLDNAIFTAGYKAILHVHSVVEECEVIELMHQIDPKTKKPMKKKVLFVKNGAGVVCRIQVSNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVMGF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00328 512 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 314 400 - -
Vivi4g00328 512 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 65 310 - -
Vivi4g00328 512 SUPERFAMILY Translation proteins 310 402 IPR009000 -
Vivi4g00328 512 Pfam Elongation factor Tu GTP binding domain 86 299 IPR000795 GO:0003924|GO:0005525
Vivi4g00328 512 Gene3D Translation factors 405 512 - -
Vivi4g00328 512 CDD EF1_alpha 90 310 - -
Vivi4g00328 512 MobiDBLite consensus disorder prediction 46 77 - -
Vivi4g00328 512 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 86 315 IPR000795 GO:0003924|GO:0005525
Vivi4g00328 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 321 IPR027417 -
Vivi4g00328 512 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 407 511 IPR009001 -
Vivi4g00328 512 Gene3D - 65 310 IPR027417 -
Vivi4g00328 512 FunFam Putative translation elongation/initiation factor family protein 404 512 - -
Vivi4g00328 512 CDD eRF3_II 317 398 - -
Vivi4g00328 512 Pfam Elongation factor Tu C-terminal domain 403 510 IPR004160 -
Vivi4g00328 512 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 142 157 IPR031157 -
Vivi4g00328 512 PANTHER TRANSLATION FACTOR 79 510 - -
Vivi4g00328 512 Pfam Elongation factor Tu domain 2 330 396 IPR004161 GO:0005525
Vivi4g00328 512 MobiDBLite consensus disorder prediction 1 77 - -
Vivi4g00328 512 CDD eRF3_C_III 404 510 - -
Vivi4g00328 512 Gene3D Translation factors 315 400 - -
Vivi4g00328 512 PRINTS GTP-binding elongation factor signature 149 157 IPR000795 GO:0003924|GO:0005525
Vivi4g00328 512 PRINTS GTP-binding elongation factor signature 169 179 IPR000795 GO:0003924|GO:0005525
Vivi4g00328 512 PRINTS GTP-binding elongation factor signature 185 196 IPR000795 GO:0003924|GO:0005525
Vivi4g00328 512 PRINTS GTP-binding elongation factor signature 229 238 IPR000795 GO:0003924|GO:0005525
Vivi4g00328 512 PRINTS GTP-binding elongation factor signature 90 103 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00328 Vivi-Chr4 7413442 7423169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00328 86 507 Eukaryotic Initiation Factors Gene Family AT5G60390 37.882 2.33e-97 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00328 K03267 - gmx:100793653 847.04