Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00326 ATGGATATTGAGGAGGACATCCGATCCTTACAGCTTGAGTCGGCAGACATAGCAGAAGACAGCAATGGGGTTGTAAGTCCAGATGATGGAAAGACAGAAGTCGAGGAATCTATTAATACAAATCAAGATCCTAAGCCGGAGGTTCAAGCACAATCTATTAAGACTGATATAAAAGATAAAGAGGTTCCGCCGGTGCAAGATGAAGAGGACGAGGAGGTGGCTGTCAAAAGACACTTAAATGTTGTTTTTATTGGTCATGTGGATGCTGGTAAATCGACAACAGGAGGCCAAATACTTTTCCTCAGTGGTCAGGTCGATGAAAGGACTATCCAAAAATACGAGAAGGAAGCCAAGGACAAAAGTAGAGAGAGCTGGTATATGGCTTACATAATGGACACGAATGAGGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACGTCAAGGTTTACGATTTTGGATGCACCAGGTCATAAGAGTTATGTCCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTATTGGTAATCTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAAAAAGGTGGTCAAACCCGTGAACATGTTCAGCTTGCAAAAACACTGGGTGTGTCTAAGCTCGTTGTTGTTGTTAACAAAATGGACGATCCTACAGTGAAGTGGTCAAAAGAAAGGTATGATGAAATTGAATCGAAAATGACTCCATTTCTTAAGCAATCGGGTTACAATGTGAAGAAAGATGTCCTGTTTTTACCTATATCTGGGCTGATCGGAACAAACCTAAAAACAAGAATGGGTAAAAGCATTTGTCCATGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGACGCCATTGAAATTCCTCTACGAGATCCTAAAGCTCCTTTCAGGATGCCCATACTCGACAAATTCAAAGACATGGGTACTGTTGTTATGGGCAAAGTGGAATCTGGTAGTATTCGTGAGGGAGATTCCTTGTTGATTATGCCAAATAAGGATCATGTGAAAGTTGTTGCTATATTTATTGATGAGAATCGAGTTAAACGTGCTGGACCTGGTGAAAATTTACGGGTTAGAGTATCCGGTGTTGAAGAAGAGGACATATCATCTGGATTTATCTTGTCTAGTACTGCAAATCCAATACCAGCTGTAACAGAGTTTGTTGCTCAGTTGGCAATCCTTGAATTGCTAGACAATGCAATTTTTACTGCTGGGTACAAGGCTATCCTGCATGTCCACTCTGTAGTTGAAGAATGTGAGGTTATTGAGCTCATGCATCAAATTGATCCGAAGACAAAGAAGCCTATGAAAAAGAAAGTCCTCTTTGTGAAGAATGGTGCAGGTGTTGTATGTCGAATTCAGGTTAGTAACTCCATTTGCATAGAGAAATTCTCCGACTTTCCACAACTTGGGAGATTCACTCTTCGCACTGAAGGAAAAACTGTCGCCGTGGGAAAAGTCATGGGTTTTTAA 1509 0.4168 MDIEEDIRSLQLESADIAEDSNGVVSPDDGKTEVEESINTNQDPKPEVQAQSIKTDIKDKEVPPVQDEEDEEVAVKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETSRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVSKLVVVVNKMDDPTVKWSKERYDEIESKMTPFLKQSGYNVKKDVLFLPISGLIGTNLKTRMGKSICPWWDGPCLFEALDAIEIPLRDPKAPFRMPILDKFKDMGTVVMGKVESGSIREGDSLLIMPNKDHVKVVAIFIDENRVKRAGPGENLRVRVSGVEEEDISSGFILSSTANPIPAVTEFVAQLAILELLDNAIFTAGYKAILHVHSVVEECEVIELMHQIDPKTKKPMKKKVLFVKNGAGVVCRIQVSNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVMGF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00326 502 CDD eRF3_II 307 388 - -
Vivi4g00326 502 FunFam Putative translation elongation/initiation factor family protein 394 502 - -
Vivi4g00326 502 Gene3D - 28 300 IPR027417 -
Vivi4g00326 502 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 304 390 - -
Vivi4g00326 502 Pfam Elongation factor Tu domain 2 320 386 IPR004161 GO:0005525
Vivi4g00326 502 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 76 305 IPR000795 GO:0003924|GO:0005525
Vivi4g00326 502 Pfam Elongation factor Tu C-terminal domain 393 500 IPR004160 -
Vivi4g00326 502 CDD eRF3_C_III 394 500 - -
Vivi4g00326 502 PANTHER TRANSLATION FACTOR 69 500 - -
Vivi4g00326 502 CDD EF1_alpha 80 300 - -
Vivi4g00326 502 SUPERFAMILY Translation proteins 300 392 IPR009000 -
Vivi4g00326 502 Gene3D Translation factors 305 390 - -
Vivi4g00326 502 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Vivi4g00326 502 PRINTS GTP-binding elongation factor signature 80 93 IPR000795 GO:0003924|GO:0005525
Vivi4g00326 502 PRINTS GTP-binding elongation factor signature 139 147 IPR000795 GO:0003924|GO:0005525
Vivi4g00326 502 PRINTS GTP-binding elongation factor signature 175 186 IPR000795 GO:0003924|GO:0005525
Vivi4g00326 502 PRINTS GTP-binding elongation factor signature 219 228 IPR000795 GO:0003924|GO:0005525
Vivi4g00326 502 Pfam Elongation factor Tu GTP binding domain 76 289 IPR000795 GO:0003924|GO:0005525
Vivi4g00326 502 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 55 300 - -
Vivi4g00326 502 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 397 501 IPR009001 -
Vivi4g00326 502 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Vivi4g00326 502 MobiDBLite consensus disorder prediction 1 55 - -
Vivi4g00326 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 311 IPR027417 -
Vivi4g00326 502 Gene3D Translation factors 395 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00326 Vivi-Chr4 7413442 7423170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00326 76 497 Eukaryotic Initiation Factors Gene Family AT5G60390 37.882 1.96e-97 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00326 K03267 - gmx:100793653 848.58