Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00325 ATGGATATTGAGGAGGACATCCGATCCTTACAGCTTGAGTCGGCAGAAGACAGCAATGGGGTTGTAAGTCCAGATGATGGAAAGACAGAAGTCGAGGAATCTATTAATACAAATCAAGACGTTGAGGAACCTACTAATGCAAAAGAAGATCCTAAGCCGGAGGTTCAAGCACAATCTATTAAGACTGATATAAAAGATAAAGAGGTTCCGCCGGTGCAAGATGAAGAGGACGAGGAGGTGGCTGTCAAAAGACACTTAAATGTTGTTTTTATTGGTCATGTGGATGCTGGTAAATCGACAACAGGAGGCCAAATACTTTTCCTCAGTGGTCAGGTCGATGAAAGGACTATCCAAAAATACGAGAAGGAAGCCAAGGACAAAAGTAGAGAGAGCTGGTATATGGCTTACATAATGGACACGAATGAGGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACGTCAAGGTTTACGATTTTGGATGCACCAGGTCATAAGAGTTATGTCCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTATTGGTAATCTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAAAAAGGTGGTCAAACCCGTGAACATGTTCAGCTTGCAAAAACACTGGGTGTGTCTAAGCTCGTTGTTGTTGTTAACAAAATGGACGATCCTACAGTGAAGTGGTCAAAAGAAAGGTATGATGAAATTGAATCGAAAATGACTCCATTTCTTAAGCAATCGGGTTACAATGTGAAGAAAGATGTCCTGTTTTTACCTATATCTGGGCTGATCGGAACAAACCTAAAAACAAGAATGGGTAAAAGCATTTGTCCATGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGACGCCATTGAAATTCCTCTACGAGATCCTAAAGCTCCTTTCAGGATGCCCATACTCGACAAATTCAAAGACATGGGTACTGTTGTTATGGGCAAAGTGGAATCTGGTAGTATTCGTGAGGGAGATTCCTTGTTGATTATGCCAAATAAGGATCATGTGAAAGTTGTTGCTATATTTATTGATGAGAATCGAGTTAAACGTGCTGGACCTGGTGAAAATTTACGGGTTAGAGTATCCGGTGTTGAAGAAGAGGACATATCATCTGGATTTATCTTGTCTAGTACTGCAAATCCAATACCAGCTGTAACAGAGTTTGTTGCTCAGTTGGCAATCCTTGAATTGCTAGACAATGCAATTTTTACTGCTGGGTACAAGGCTATCCTGCATGTCCACTCTGTAGTTGAAGAATGTGAGGTTATTGAGCTCATGCATCAAATTGATCCGAAGACAAAGAAGCCTATGAAAAAGAAAGTCCTCTTTGTGAAGAATGGTGCAGGTGTTGTATGTCGAATTCAGGTTAGTAACTCCATTTGCATAGAGAAATTCTCCGACTTTCCACAACTTGGGAGATTCACTCTTCGCACTGAAGGAAAAACTGTCGCCGTGGGAAAAGTCATGGGTTTTTAA 1530 0.4163 MDIEEDIRSLQLESAEDSNGVVSPDDGKTEVEESINTNQDVEEPTNAKEDPKPEVQAQSIKTDIKDKEVPPVQDEEDEEVAVKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETSRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVSKLVVVVNKMDDPTVKWSKERYDEIESKMTPFLKQSGYNVKKDVLFLPISGLIGTNLKTRMGKSICPWWDGPCLFEALDAIEIPLRDPKAPFRMPILDKFKDMGTVVMGKVESGSIREGDSLLIMPNKDHVKVVAIFIDENRVKRAGPGENLRVRVSGVEEEDISSGFILSSTANPIPAVTEFVAQLAILELLDNAIFTAGYKAILHVHSVVEECEVIELMHQIDPKTKKPMKKKVLFVKNGAGVVCRIQVSNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVMGF 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00325 509 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 62 307 - -
Vivi4g00325 509 FunFam Putative translation elongation/initiation factor family protein 401 509 - -
Vivi4g00325 509 Gene3D - 62 307 IPR027417 -
Vivi4g00325 509 Pfam Elongation factor Tu GTP binding domain 83 296 IPR000795 GO:0003924|GO:0005525
Vivi4g00325 509 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 311 397 - -
Vivi4g00325 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 318 IPR027417 -
Vivi4g00325 509 PRINTS GTP-binding elongation factor signature 182 193 IPR000795 GO:0003924|GO:0005525
Vivi4g00325 509 PRINTS GTP-binding elongation factor signature 226 235 IPR000795 GO:0003924|GO:0005525
Vivi4g00325 509 PRINTS GTP-binding elongation factor signature 146 154 IPR000795 GO:0003924|GO:0005525
Vivi4g00325 509 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Vivi4g00325 509 PRINTS GTP-binding elongation factor signature 166 176 IPR000795 GO:0003924|GO:0005525
Vivi4g00325 509 MobiDBLite consensus disorder prediction 43 60 - -
Vivi4g00325 509 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 404 508 IPR009001 -
Vivi4g00325 509 Gene3D Translation factors 312 397 - -
Vivi4g00325 509 Gene3D Translation factors 402 509 - -
Vivi4g00325 509 CDD eRF3_C_III 401 507 - -
Vivi4g00325 509 SUPERFAMILY Translation proteins 307 399 IPR009000 -
Vivi4g00325 509 CDD eRF3_II 314 395 - -
Vivi4g00325 509 PANTHER TRANSLATION FACTOR 76 507 - -
Vivi4g00325 509 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 139 154 IPR031157 -
Vivi4g00325 509 MobiDBLite consensus disorder prediction 1 60 - -
Vivi4g00325 509 Pfam Elongation factor Tu domain 2 327 393 IPR004161 GO:0005525
Vivi4g00325 509 Pfam Elongation factor Tu C-terminal domain 400 507 IPR004160 -
Vivi4g00325 509 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 312 IPR000795 GO:0003924|GO:0005525
Vivi4g00325 509 CDD EF1_alpha 87 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00325 Vivi-Chr4 7413442 7423170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00325 83 504 Eukaryotic Initiation Factors Gene Family AT5G60390 37.882 3.97e-97 299