LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g00321	ATGACTGAATTAGATCCGTCTAAGAAAGTAGCTGATAGGTATCTCAAACGTGAGGTCCTTGGTGAAGGTACCTATGGTGTCGTTTACAAAGCCATTGATACCCAGACGGGACAGACGGTTGCTATTAAGAAGATTAGGATTGGCAAGCAGAAAGAAGGGGTGAATTTTACGGCTCTTAGAGAAATCAAATTGCTTAAAGAGCTCAATGATCCAAATATAATTGAGTTGATTGATTGCTTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGACCGGAATATTTTCCTTTCACCGGGGGATATCAAGTCTTACCTTCAAATGACGTTTAAAGGTCTTGCTCATTGTCACAAAAAATGGATATTGCATAGGGATATGAAGCCTAATAATTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCTGATTTTGGTTTAGCACGGATATTTGGAAGCCCGGATCGCAGGTTCACTCATCAGGTGTTTGCACGGTGGTATAGAGCACCTGAGCTATTATTTGGTACTAAGCAGTATGGCCCAGGAGTTGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTTCTTCGTCGGCCCTTTTTGCAGGGTTCAAGTGATATGGACCAATTAGGAAAGATTTTTGCAGCATTTGGAACTCCATCTCCTTCTCAGTGGTCTGATATGGTATACCTTCCTGATTATGTCGAATATCAATATGTGCCTGCCCCTCCTCTGCGTTCTTTATTTCCAATGGCAAGTGAAGATGCTTTAGACTTGTTGTCTAAGATGTTTACATATGACCCAAAGGAACGAATTTCGGTGCAGCAGGCATTAGAACACAGATACTTTACTTGTCCTCCTCCGCCCACAGATCCAGATAAGCTTCCAAGACCAGCCCCTAAGAAGGAAATTAAGGAATCAGATTTGAATCCACGTGAGGGTCCCACAGTCTTATCACCTCCTAGAAAGACTAGGAGAGTAATGCCAGGACGCGATGGACTTGAAGGAAGTTCGTTGCAAGGAGACAAGGTTGATGATACTCATTCTAACCGGGAACAGGCCGCTGGTGATAATATAGGAAAAAGTGATCCCGCACCAATGTCACTTGATTTTTCTATCTTTGGATTAAAACCTCCAAACAGACCAACAATTAACAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCCAGTAA	1239	0.4197	MTELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRIGKQKEGVNFTALREIKLLKELNDPNIIELIDCFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTFKGLAHCHKKWILHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDMDQLGKIFAAFGTPSPSQWSDMVYLPDYVEYQYVPAPPLRSLFPMASEDALDLLSKMFTYDPKERISVQQALEHRYFTCPPPPTDPDKLPRPAPKKEIKESDLNPREGPTVLSPPRKTRRVMPGRDGLEGSSLQGDKVDDTHSNREQAAGDNIGKSDPAPMSLDFSIFGLKPPNRPTINSADRSHLKRKLDLEFQ	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g00321	412	MobiDBLite	consensus disorder prediction	293	412	-	-
	Vivi4g00321	412	Gene3D	Phosphorylase Kinase; domain 1	5	94	-	-
	Vivi4g00321	412	MobiDBLite	consensus disorder prediction	398	412	-	-
	Vivi4g00321	412	SMART	serkin_6	14	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g00321	412	Gene3D	Transferase(Phosphotransferase) domain 1	95	310	-	-
	Vivi4g00321	412	Pfam	Protein kinase domain	16	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g00321	412	ProSiteProfiles	Protein kinase domain profile.	14	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g00321	412	SUPERFAMILY	Protein kinase-like (PK-like)	10	300	IPR011009	-
	Vivi4g00321	412	ProSitePatterns	Protein kinases ATP-binding region signature.	20	49	IPR017441	GO:0005524
	Vivi4g00321	412	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468
	Vivi4g00321	412	MobiDBLite	consensus disorder prediction	306	321	-	-
	Vivi4g00321	412	FunFam	Putative cyclin-dependent kinase 7	95	310	-	-
	Vivi4g00321	412	PANTHER	CELL DIVISION PROTEIN KINASE	12	298	-	-
	Vivi4g00321	412	MobiDBLite	consensus disorder prediction	349	363	-	-
	Vivi4g00321	412	FunFam	Cyclin-dependent kinase D-1	5	94	-	-
	Vivi4g00321	412	CDD	STKc_CDK7	13	295	IPR037770	GO:0005675\|GO:0008353\|GO:0070985

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g00321	Vivi-Chr4	7381539	7385994	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g00321	4	411	Core Cell Cycle Gene Families	AT1G73690	74.265	0.0	609

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CDK7	Vivi4g00321		Pkinase	3.7e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g00321	K02202		-	gmx:100814263	736.873