LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g00295	ATGGATCCACCACTTATCTCCATATCCGCATCGAATTTCATCCAACCGAATTATCCTGACTCGTTAGAGTCTTTATCACCACGATCACAACCACCACCACGATCACGAGAACCGATGAACGATGAGCCTCTAGCTAATGTCCCAAACGCCAAGCTTCGTCTTATGTGCAGCTACGGAGGCCATATAATGCCGCGTCCTCACGATAAATCCCTACTTTATGTTGGTGGTGATACTCGAATAGTGGTGATCGACCGTAGCTCTTCGTTGAAAGACCTATGTTCGCGCCTTTCGCGGACAATTCTTAATGGAAGACCTTTTACTCTCAAGTACCAGCTTCCAAATGAAGACCTTGACAGCCTCATCACTGTCACGACAGATGAAGATCTCGACAACATGATCGAAGAGTATGATCGAATATCATCTTCATCTTCGACCATGAAATCTTCTTCGAGACTCAGAGTGTTTCTGTTCTTCACAAAACCAGAGTCAACACTCTCAATGGGATCACTCCTTGATGATGCGAAATCCGAGACATGGTTTGTTGATGCACTCAACAACTCGGGGATTCTCTCGAGGGGTGTCTCGGATTCAGCAGGAGATTCTTTCGTGAATCTTGATAATGTTCCTGCTAGCGATTCAAGCAATAACTTGGAAGCACAAGGTGTTGGAACAGCAGTAGAGACATTGAACCTTCTCGAAAACAGCAGCAGCAGCAACAACAATGTTAAGAATGTTTTTGATGTTGTTAATGTTGTGAACTCAACACCTGGTTCACCAATGCTGGAAAATAGTCCATCTTCATCTTCTCTGTCTACTTCAATGGCGAATTTGCCTCCGATTCGTGTCCGTGTTGACGAAACCGTTGGTAGTAGGCTTCAACAAGAGAATAAAGTTGCAATGAAGCAAGATGATGGATTTGTTGTATCTTCTGCTAATGTGGCTATGGCTGCAATTCCTGCAACATTGACTATGGCTTCAGCTGGTGTTGTTACTACTGCTGTTACTAGTGATGTTAATGTGAATAGGGTTGTTTCTGATGATGAGAGATTAGAGTATGGAGGAGTCATTGGAGCTCGAAAACCGCCTTTACCGTTGCAGCTTGTTCAGCCGAGGACTAGTGGTGGTTTGAGTCTTCCATCACCAGATTCAGTCACAAGTGATACTAGTAGTATTGCATCTACAAATTCTTTCTCCAAAATCATTTATCATCAAGAACAAGTCCAAATCCAACCTACAAACATAGACACCAAACCTCAACCTCAAGATTCTAGTTACATGTTACCTCAACAAGTGGATCAAAACCAACAACTCCAACCACCACAACAACAACAACAATTTGTTCATTCCAACACTCACTATATCCACCACCCTACATCCACAAATCAAGTTCCAATCCCATCATACTACCAAGTCTATCCCCCACAATCACAACAACAACAGCTTCACAATCCAATTGCTCAACAACAATATCCAATCTATGTAATGCCAATTGGAACCACACAACAACAACCATACAACATGACATTGCAACATTCTCTAAGTGACCCTAATGTTGTGACCTCTATTAGGCCACTAATACCTCAAAGTGGAACTCCACCAATTTACCCTAATAAATCACCTAACCCTAATGTGCCATCCAATTCAACATTTGTTCAAGTTCCTTCAAATCAATTTCAACAACAATTTGTTGGTTTGCCTCAATTCCATCATCAACCACAACATCCAATCAATGTAGCTCCTTCTAGTGGTACTAACTATGGTTATGAGTATGGTGGCAATGTGGAAGGTCAAGTGTACTATACTCAACAAACAACTAATGCTCCTTTGGTTACTCAGTACCAATCCATGACCCCTGCAGCTGCTGCTGCAGCATTATCTGATGCTTCAAATCAGTTTCCTGCAGATAATGTTCAGCAATCAAATAGAACTTCGCAGCCGGTTTAA	1944	0.4218	MDPPLISISASNFIQPNYPDSLESLSPRSQPPPRSREPMNDEPLANVPNAKLRLMCSYGGHIMPRPHDKSLLYVGGDTRIVVIDRSSSLKDLCSRLSRTILNGRPFTLKYQLPNEDLDSLITVTTDEDLDNMIEEYDRISSSSSTMKSSSRLRVFLFFTKPESTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNVPASDSSNNLEAQGVGTAVETLNLLENSSSSNNNVKNVFDVVNVVNSTPGSPMLENSPSSSSLSTSMANLPPIRVRVDETVGSRLQQENKVAMKQDDGFVVSSANVAMAAIPATLTMASAGVVTTAVTSDVNVNRVVSDDERLEYGGVIGARKPPLPLQLVQPRTSGGLSLPSPDSVTSDTSSIASTNSFSKIIYHQEQVQIQPTNIDTKPQPQDSSYMLPQQVDQNQQLQPPQQQQQFVHSNTHYIHHPTSTNQVPIPSYYQVYPPQSQQQQLHNPIAQQQYPIYVMPIGTTQQQPYNMTLQHSLSDPNVVTSIRPLIPQSGTPPIYPNKSPNPNVPSNSTFVQVPSNQFQQQFVGLPQFHHQPQHPINVAPSSGTNYGYEYGGNVEGQVYYTQQTTNAPLVTQYQSMTPAAAAAALSDASNQFPADNVQQSNRTSQPV	647

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi4g00295	647	MobiDBLite	consensus disorder prediction	8	30	-	-
Vivi4g00295	647	MobiDBLite	consensus disorder prediction	629	647	-	-
Vivi4g00295	647	Gene3D	-	72	157	-	-
Vivi4g00295	647	PANTHER	OS05G0427100 PROTEIN-RELATED	18	502	-	-
Vivi4g00295	647	SMART	PB1_new	66	157	IPR000270	GO:0005515
Vivi4g00295	647	MobiDBLite	consensus disorder prediction	625	647	-	-
Vivi4g00295	647	ProSiteProfiles	PB1 domain profile.	51	157	IPR000270	GO:0005515
Vivi4g00295	647	MobiDBLite	consensus disorder prediction	370	390	-	-
Vivi4g00295	647	MobiDBLite	consensus disorder prediction	1	45	-	-
Vivi4g00295	647	Pfam	PB1 domain	67	157	IPR000270	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g00295	Vivi-Chr4	6598826	6601686	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g00295	40	186	MAP Kinase Kinase Kinase	AT5G57610	42.568	1.17e-27	117

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g00295	-		-	cam:101514979	765.763

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi1g03665	1	78591870	78594753	Vivi4g00295	4	6598826	6601686	ECH
	Vivi4g00295	4	6598826	6601686	Vivi4g00295	4	6598826	6601686	ECH

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