Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00292 ATGCCTGTTCTCACAAGACGCATGAAATGGAGAACAACCATTTCAGAAACTGATCCAACTTCACAAATTTCTCCCATAATCCAATCCATTTCTTGCAAATCCACAATCTGCACCCTCTTTTCCACTATCTCCAACAATGAAACCACACATGACAGTAACAAAAACAAGACAAAAAACAACAAGAAAAACAGCAACAATGTTAATAACACCAGTACAAAGTTTTCTGCAGCATCGACCCTCAGAGGACTCGGTTGCACCGCCGGTGCATCGCAACAGGTGTCTGTACCGGCGGTGATTCGGTCCTCTGAAGATTGGCAGAAGAATAGAAAAAAGAAGAAAACAAGGAACAGTAACAGTAACATTAACAGAAACAAAACATGTCATGGTGTTGTTGTTGTTGATGATGATGTTCCTTTTCAGGAAGTTTGGTGTGGACCTGGAATTGGGTTCTCATCTGATGCTGCTGTTGTTTCTGTTTCTGAAGATAGTGTTGTGACAACAAGAAAGAATGTTTCTTCAAGAGGAAAACTTGATAATGGGGAAAGAATATTACATAGAGAGCGTTCTTCTTATTTTGGAAGACACAGTTTAAATCAAGAAACTTTATCATATTTGAATGATGATGATGATAATTCTGATGTTTTCACAACACGTCATGGATTAGAGTCTTTTGGTAATGGTAGATTCTATCGAAATTCCGAGATAATGATAATTCAAGGAAAACGATTCATGGGAGGACGAATGAACTCGCGCGACCAATTTAGAGATTGGAGACTCGATGTTGATAATATGTCGTACGAGCAATTGCTTGAGCTCGGAGAAAGAATCGGCTATGTGAAAACTGGACTTAAAGAAGATGAGATGAGACATAACATAAAGAAAATTAAGGTTTTGGTTTCGAATGATATATCAAAGAATCAAATAGACAAAAAGTGCACCATTTGTCAAGAAGAATATGAATTAGATGATGAATTGGGGATGTTAAATTGTGAACACTGCTATCACTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAATTTCTGTCCGATTTGTAAGCAAGAAGTCGCGGTTCGACATTGA 1083 0.3758 MPVLTRRMKWRTTISETDPTSQISPIIQSISCKSTICTLFSTISNNETTHDSNKNKTKNNKKNSNNVNNTSTKFSAASTLRGLGCTAGASQQVSVPAVIRSSEDWQKNRKKKKTRNSNSNINRNKTCHGVVVVDDDVPFQEVWCGPGIGFSSDAAVVSVSEDSVVTTRKNVSSRGKLDNGERILHRERSSYFGRHSLNQETLSYLNDDDDNSDVFTTRHGLESFGNGRFYRNSEIMIIQGKRFMGGRMNSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMRHNIKKIKVLVSNDISKNQIDKKCTICQEEYELDDELGMLNCEHCYHFQCIKQWLVHKNFCPICKQEVAVRH 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00292 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 358 IPR013083 -
Vivi4g00292 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 50 356 IPR045191 GO:0061630
Vivi4g00292 360 Pfam Ring finger domain 311 353 IPR001841 -
Vivi4g00292 360 SMART ring_2 312 352 IPR001841 -
Vivi4g00292 360 MobiDBLite consensus disorder prediction 100 122 - -
Vivi4g00292 360 SUPERFAMILY RING/U-box 311 357 - -
Vivi4g00292 360 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Vivi4g00292 360 MobiDBLite consensus disorder prediction 47 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00292 Vivi-Chr4 6587040 6590180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00292 70 267 C3H Transcription Factor Family AT1G73760 39.286 1.49e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00292 - - gmx:100818517 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00292 4 6587040 6590180 Vivi5g06563 5 172535674 172538283 ECH
Vivi4g00292 4 6587040 6590180 Vivi4g00292 4 6587040 6590180 ECH