Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00280 ATGAGGTTGGGGGAAATGGGGTTGGATCTCTGGATGTGCTGTTTCACTTCCACTTCTGACACATTTCGAAAGCAGACTGAATGGAAGTGGCAAATCTTCCCTTATCACAAACTTAAAATAGCCACAAATTATTTTCATCAAGCTCGGATTCTTGATAAGAAAGGCTCTGCCACAGTATATTATGGAAAACTTAAGAATGGTCGTGAGATTGCAGTACAAAGCTTTAAGGAGGACAAGTGCAACATATTGAAACAGTTCATCGAAGAAACTGTTATCCTAAATTTCATGCCCTGCAAAAACCTTGTTACAATTTATGGATATTCCACTCATCAAAAGGAATTCTTGCTAGTACATGAATACCTGTCCAATGGGACTCTTGCTACTCATATTAAAGGCCAACCATCAGATAGCCGAACAACGTTAACTTGGCCAAACCGATTGGATATTGCAATTGATATAGCAAGTGCATTGAACTATCTTCACTACAAGGGCATTGTCCACCGTAATGTTAAGTCTAATAATATTTTCCTTGATATAAACTTTTGTGCTAAACTTGGTAACTTTCATTTGTCAAAGAAACTTGTTGTTGAAGCAACCGATGTTACGAGAGACTTGATAGGAACAAGTGGTTATATCGACCCAGAACTTGTGTCAAAAGGCTTACTTAGTGTTAAAAATGATGTTTATAGCTTTGGGGTGGTGTTATGTGAGCTTGTGTCATCCATGCTTGCAGAATATTATGTTCATAACGAAGAAGAAAGTCTAGCTACATTTTTAATGACAAAAGTTGAAAACCAAGCTTTGGTCGAGCTTTTGGATCCAAATCTTGGCTTTCAGTCAGACGTTAAGATCGACAAGATGATGACTGCTACGGCTGAGCTTGCATTTTGGTGTTTGCAATGTCCACAAGAATTAAGGCCGAACATGGAACAAGTGCTAGAGAGTCTCAATGGCATAAAACAAGGGAGATATGAGTTAAGCCCAATAAAAGCTTTCAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACAAACCATTTTGACACTTTCCTAGGAAAGGGAGGGTTCGGCAGTGTCTACTACGGAAAACTAAAAGACGGTAGAGAAGTTGGAATAAAACGTTTCCATGAAGAGACAAACAGAACAATTAAGCAATTCATGAAAGAAATTGAGATTGCAAGTCACTTGCGTCATCAAAATCTGGTTTTACTTTATGGCTGCAGTTCTCGTCATAGCGACAAGCACATGCTAGTGTATGAGTACATCTCTAATGGAACTCTTTCACAGCATCTCCATGGATCTTCAGGCAGTACGTTATCGTGGCCTAGTAGATTGAATATTGCCATTGAAACTGCAAAGGCCTTGGTATATCTTCATGACTCAGGTATCATCCATCGCGACATAAAAGGAAGTAATATTCTGCTGGATGAAAATTTAACTGTTAAAGTTGCAGATTTTGGACTGTCGCGGTTTCTTCCGGACTATGTTACTCACGTTTCAACTCTTCCGGTTGGAACTCGTGCTTACATTGATCCAGATTACTTTGAAACTGGAAGGGTGAGTGACAAAAGTGATGTGTATAGCTTCGGGGTGATCTTATTCGAGCTTATATCATCCAAACCCGCAAGTTTAATGCAAGGAACGGAGAATGTGACTCTCGCCCAATTCGCAATGCATAAAATCTTAAACAAGAATTTACAAGGGCTAGTGGATCAAAGTCTTGCAATTTGTTTTAATGAAAATGTTGTGGAAATGATAACAGCGGTGACAGAGTTAGCATTTCAGTGTGTCCAGTGTCCTAAGGAACTCAGGCCAACCATGAAACAGGTGTTACAAACTCTACAGGGCATAAGCAAGGGGACATGGGGATTCAACCAAATAACATAG 1887 0.3948 MRLGEMGLDLWMCCFTSTSDTFRKQTEWKWQIFPYHKLKIATNYFHQARILDKKGSATVYYGKLKNGREIAVQSFKEDKCNILKQFIEETVILNFMPCKNLVTIYGYSTHQKEFLLVHEYLSNGTLATHIKGQPSDSRTTLTWPNRLDIAIDIASALNYLHYKGIVHRNVKSNNIFLDINFCAKLGNFHLSKKLVVEATDVTRDLIGTSGYIDPELVSKGLLSVKNDVYSFGVVLCELVSSMLAEYYVHNEEESLATFLMTKVENQALVELLDPNLGFQSDVKIDKMMTATAELAFWCLQCPQELRPNMEQVLESLNGIKQGRYELSPIKAFKIFHHAELEEATNHFDTFLGKGGFGSVYYGKLKDGREVGIKRFHEETNRTIKQFMKEIEIASHLRHQNLVLLYGCSSRHSDKHMLVYEYISNGTLSQHLHGSSGSTLSWPSRLNIAIETAKALVYLHDSGIIHRDIKGSNILLDENLTVKVADFGLSRFLPDYVTHVSTLPVGTRAYIDPDYFETGRVSDKSDVYSFGVILFELISSKPASLMQGTENVTLAQFAMHKILNKNLQGLVDQSLAICFNENVVEMITAVTELAFQCVQCPKELRPTMKQVLQTLQGISKGTWGFNQIT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00280 628 Gene3D Phosphorylase Kinase; domain 1 19 120 - -
Vivi4g00280 628 Gene3D Transferase(Phosphotransferase) domain 1 422 622 - -
Vivi4g00280 628 Gene3D Transferase(Phosphotransferase) domain 1 121 330 - -
Vivi4g00280 628 SUPERFAMILY Protein kinase-like (PK-like) 327 617 IPR011009 -
Vivi4g00280 628 SMART serkin_6 345 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00280 628 SMART serkin_6 45 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00280 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Vivi4g00280 628 Pfam Protein kinase domain 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00280 628 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 332 621 IPR044652 GO:0004672
Vivi4g00280 628 CDD STKc_IRAK 351 617 - -
Vivi4g00280 628 FunFam Wall-associated receptor kinase 3 422 627 - -
Vivi4g00280 628 Gene3D Phosphorylase Kinase; domain 1 331 421 - -
Vivi4g00280 628 ProSiteProfiles Protein kinase domain profile. 45 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00280 628 SUPERFAMILY Protein kinase-like (PK-like) 25 321 IPR011009 -
Vivi4g00280 628 ProSiteProfiles Protein kinase domain profile. 345 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00280 628 Pfam Protein tyrosine and serine/threonine kinase 347 614 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00280 Vivi-Chr4 6296192 6299187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00280 334 617 Receptor kinase-like Gene Family AT1G25390 55.517 1.50e-100 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00280 PK_Tyr_Ser-Thr 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00280 - - mtr:25496807 909.442