Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00278 ATGAAAACCATCAGTTGGAACTGCAGAGGGTTGGGGAGCCCTCGAGCAGTTCGAAGTCTTGCGAGACTTCTCAAGGTAGAAAATCCCCATCTTGTCTTCCTTATGGAAACAAGATTGAAATCGGAAGAGATGTTACAACTAAAGAGAAAATTTAATTTCAACTTTGGTGTTACTGTTGACTGTAGTGGTGATGGGAGGGATAGAGCCGGTGGGTTATGTTTGTGGTGGAATGAGGATTTGGACATCAATATAAATTCCTACTCCCAAAATCATATAGCAGGTAAGTGCCTTAGTGAGGATGGTGATGAGGACTGGTTTTTTGCTGGGATTTATGGTTATCCAGATGAAGCCAGGAAATTGGAAACTTGGAATCTGATTCATGCTCTTAAAGATGAAGGGGGTTCTAAAACTATCTTCTTTGGTGACCTAAATGATACTATTACTGAAGCAGACAAGCTGGGGGGAATCAGCAGAACACCGTCACAGTTACAGAGAGGGAGAAATACTATGGATACTTGTGGACTGCAGGAAGTGGCTTTCGAAGGATATCCATTCACGTGGACGAACGGGAGAGTAGGGAGTGAAAATATCCAATGCCGACTTGATAAAAGCTTGACCTCGTTTGAGTTTTTGCAGAGGTTTCCTCTCACTAGAGTTTTCCACCTCGATCGTTATGGCTCCGACCATGCTGCGTTGCGGATTGTTATACAACGAGAAGACGAGACTGTCAGAAGGAGATACTTGTTCCGGTTCGAGGAAGCCTGGACCAAGGAGGGGCGATGTGGGGATTTAATCAAGGTTTTATGGAGAAGAAACTCAGGACCTCTCCCTAAACAGATCAGTTCTATGCAGGAACTTCAGTACGAATTCAAGGACCTGCGAACCAACAACATAAGGAAAGAGATTTTGCGGCTGGAGGAGCTCATCAAAACAGATAAACAATGGTCAGGGGATCCTGTGGAAATTCAGGAGTATAAAGCTATTGAAAGTCAAAGAGATAGACTGCTGAGAATAGAGGAGACCCTTTGGAGACAGAGAAGTAGAGCAGTGTGGCTTAGAGACGGAGATAGAAATACCAAATTTTTCCACCTTAAAGCGGATCAAAGGAGGAAGACTAATCAGATTAAGAGGTTGAAGGACAAAGACGGCAAGTGGATGCGGGGGAAGGAAAATTGTGAGAGAATTCTGGTTTCTTATTTTAAAGATATTTTTACCTCTTCCAATCCTACAAATACGAGTGAGGTTTGTAATTCTATCCGCCGGAAACTTTCTGAGAATGATAAAATCTCATGTGCTAGACGATTTACAGCTACGGAGGTCACAGAGGCTCTATTTGAAATGCACCCCACCAAGGCACCGGGTCCGGATGGTCTACCTGCCTTGTTCTTCCAAAAATTCTGGCCCACTGTTGGAAATGACGTGATCCGCTTCGTGCTGGCAATTCTCAATGAAAATGGGGATCCTACTGCCATTAACAATACATTTATCTCCCTCATACCTAAAAGGAAAAATCCATCCAACCCTGGAGACTTTCGCCCGATTAGCCTATGCAATGTGATCATGAAGATTGTCACCAAAGCAATTGCTAACAGGATGAAGCCTTTTCTTCCGGAGATCATTAGCGAGGAGCAAAGTGCATTTATAAAGGGAAGGCTTATAACGGACAACGCGTTAATAGCGATGGAGTGCTTTCATTGGATGAAACATAAAACAAAAGGGAAAAAAGGAACTATGGCGTTGAAGCTTGATATGTCTAAAGCTTATGATAGATTAGAGTGGAGATTTGTGGTGGAAGCCTTGAGTAGAATGGAGTTCCCCCCATCCATTATCTCTCTCATTCACAAATGCATTTCAACAGTCTCGTACCAATTGCTAATCAATGGTCAGCCGAGCAAACGGTTCATCCCAGCTAGGGGCCTCCGTCAAGGAGACCCACTCTCACCTTATTTGTTTGTTATCTGTGCAGATGTACTTTCTAGTATGCTTAAAAATGAAGCTGAGGCGAGGAAGATACATGGAATCAAAGTAGCCAGGAACTCCCCAACCATCTCTCATCTCTTTTTTGCAGATGACAGCTTGTTGTTCGCCAGAGCAAATGAAGAGGAGGCAGCTCGTATTCAACAGGTCCTCGAGTCTTACCAAAAAGCCTCGGGTCAGAGCATTAACGCTGATAAATCCGAAGTTTCTTTTAGTAGAAACACTGGAGAAGAAGCTAGAGAAAGGATCAAAGATAAGCTGGGATTTAAAGGAGTTAACAGTCACTCCAATTATTTAGGGCTTCCGGTGGTTTTAGGGAGATCTAAAAAAGAGGTTTTTCGAATGGTGGTTGACCGGGTTTGGAAGAAAGTAAAAGGTTGGAAAGAAAAGTTTCTCTCAAGGGCCGGCAAAGAAATCCTGATCAAGGCTGTAGCACAGGCTATACCGACGTATATTATGAGTTGTTACCGCCTAACTGATAGTGTCTGCACCGAAATTGAAGCAATGCTTGCCAAGTTTTGGTGGGGCTCTAAAGAAGGGGAGCGGAAAATACATTGGCTGAAATGGGACAAATTGACAGTGTCTAAAAGGGAAGGTGGACTCGGCTTCAGAGGTATCCAAGACTTCAACACTAGTCTCCTTGGAAAACAGTTCTGGAGGCTTCTACAGGCGGATGGTTCTCTTCTGCAGCGTTTCTTCAAAGGTCGTTATTATCCCCGTTGTTCTATTACAGATGCGAGCACTGGATTCAAACCAAGCTATGCCTGGCGCAGTATTATGAGCTCTAAGGATCTGGTCATGAAAGGTTCTCGTTGGCGGATTGGAAACGGAGAGAATGTCAGTATCTTTGGGGATAGGTGGATTCCGACACGACCTGACTTCAAACCTTCTGCTAGAGCCCGTGTCCTAAACGAAACAAGCAAAGTCAGCTCTCTAATAGAATCCAATAGTGCTTCTTGGAATATGGATGTTCTTCGTGAAAACTTCTGCGAGGAGGATGTTAGACACATAAGCAGTATATCTCTTTCTCACCAACTCCCTGCTGACAGCCTTATCTGGCACTATGAAATTGATGGAGCCTATTCAGTGAAGACAGCCTACCATATTCAAAGAACATTGAGCCATCAAAATGACCCTGAATCTTCATCAACACACAATCTCTTTTTCTGGAAACAACTTTGGAAACTTCAAGTGAATCCAAGGATAAAAAATTTCTTGTGGAGGCTTTTCAAAGATATTCTGCCCACAAAATTGAACCTGCTAAAGAAAGGTATACCATCTGATGGAATCTGTCCTCTGTGTAATTCTGACCAAGAGAGCTCTCTTCATCTGTTCCTCTATTGTGATTTTGCTAGAAGAACGCTCTTTGCTGGCCCACTGGGAATTCGTACTCCGGGAGCGGGAGACATTGCAGACTGGCTCAGTGCTATTTATAAGAGCAAGGACATGGTGATGGGGCAAGTGATTGCCATATTCTTGTGGAAAATTTGGCAAGTCCGTAACGGTGTGGTCTTTCGTAATCTGAAACCATGTCCAGGTGCGGTGGCCATGGACATTTGGAATTCTATCCCTGAGGAATCAGTGGGATGCTTGAGTTCAAGGATGAGCAGGCAACAAGCTGACTCTGCATTGAGAAGGTATGAGGGCTGGACCGTTCAAACGGACGCAGGCTGCTTTGATGAAGGTGTGGTTTCCTTTGGTTGTGTCATTCGGGATCCTACATCCAATATTTTCCTTGCTGCTACAAAGAGAATTATAAGCATTACAGACCCGGCTAATGCTGAAGCGCAGGCTATTCGATGGGCTCTGTCAGTGGCAAAGGAGTTGGGACTCAAGGATTTCGTTCTCCAGTCGGATGCTATGACAGTAGTGGACTGCATTAACGGCGTTGTCACCAATGCAGAACTGAATCCTATTATTCTTGATTGCAAACTTTTAATGTCTAGCTTTAATAGTGTGTCTGTTATGTTTATCAGTAGGTGTGTCAACACTGATGCACATCAATTAGTTAGTATTGGCAAACACTCTGGAACTAGGACTTGGACGGGTTTTATCCCCAGTACTGATCCTTCTGTGAGCTGGCATGGAAAAATGAAAACCATTCTAGGTATTGGAAGTGCAATAATGGTAGCATTGCTGATGTGCGTCATATTTTGTTGTATTAGAGGTAAACCATCAATACAACAAGTAAATTTCCGGTATAAAACAAAAAATGATAAAAATATCGAAGCATTTTTCAAAGAAAATGGAGCTCTAACGCAAAAGAAGTATAAATTTTCTGAAATAAAGAAAATGACAAATTCATTCGAAATTAAACTTGGTCAAGGGGGTTTTGGGGTTGTGTATAAAGGAAAGTTATTCAATGGTTGTCTTGTGGCGGTGAAGATATTGAATGCATCAAAAAGAAATGGTGAAGATTTTATTAATGAGATTGCAAGTATTACTAGAACCTCACATGTTAATATTGTCACTCTTGTTGGATTTTGTTTTGAAGGTAGTAAAAAAGCACTTGTATATGAATTTATGTCTAATGGTTCTCTAGACAAATTTATTTATAATAAGGGACCTGAAACTATTATATCTGTAAGTTGGGATAATTTGTATCAAATTGCGAAAGGAATAGCTCGTGGGCTAGAGTATTTGCATAGAGGATGCACCACTCGAATTTTACATTTTGACATTAAACCACATAATATTCTTTTGGATGAGAACTTTAGTCCAAAGATTTCTGATTTTGGACTTGCAAAGCTCTGCCCTAAAAAAGAGAGCATTATCTCGATGTCGGATCAAAGAGGGACGATGGGATATGTAACTCCGGAAGTGTGGAATAAACATTTTGGAGGAGTTTCACATAAGTCTGATGTTTATAATTATGGAATGATGTTGTTAGAAATGGTGGGTGGGAGGAAAAACATTAATGCTGAAGCAAGTCACACAAGTGAGATATATTTTCCTCGTTGGGTATTCAATAAACTTGAGTTTGGTAGTGATTTGAGACCTGGTGTAGTAATGGATACAGAAGAAGATGAGATTGCAAGGAAAATGACCATTGTGGGTTTATGGTGTATTCAAATATTTCCTAATGATAGGCCTACTATGAGTAAAGTGGTTGAAATGTTAGAAGTTAGCACAAGTTCTTTAGAAATACCACCAATGCCATTACTTTCCTCTCCTATTAGACCAGTATCAGAGTCTTGA 5175 0.4178 MKTISWNCRGLGSPRAVRSLARLLKVENPHLVFLMETRLKSEEMLQLKRKFNFNFGVTVDCSGDGRDRAGGLCLWWNEDLDININSYSQNHIAGKCLSEDGDEDWFFAGIYGYPDEARKLETWNLIHALKDEGGSKTIFFGDLNDTITEADKLGGISRTPSQLQRGRNTMDTCGLQEVAFEGYPFTWTNGRVGSENIQCRLDKSLTSFEFLQRFPLTRVFHLDRYGSDHAALRIVIQREDETVRRRYLFRFEEAWTKEGRCGDLIKVLWRRNSGPLPKQISSMQELQYEFKDLRTNNIRKEILRLEELIKTDKQWSGDPVEIQEYKAIESQRDRLLRIEETLWRQRSRAVWLRDGDRNTKFFHLKADQRRKTNQIKRLKDKDGKWMRGKENCERILVSYFKDIFTSSNPTNTSEVCNSIRRKLSENDKISCARRFTATEVTEALFEMHPTKAPGPDGLPALFFQKFWPTVGNDVIRFVLAILNENGDPTAINNTFISLIPKRKNPSNPGDFRPISLCNVIMKIVTKAIANRMKPFLPEIISEEQSAFIKGRLITDNALIAMECFHWMKHKTKGKKGTMALKLDMSKAYDRLEWRFVVEALSRMEFPPSIISLIHKCISTVSYQLLINGQPSKRFIPARGLRQGDPLSPYLFVICADVLSSMLKNEAEARKIHGIKVARNSPTISHLFFADDSLLFARANEEEAARIQQVLESYQKASGQSINADKSEVSFSRNTGEEARERIKDKLGFKGVNSHSNYLGLPVVLGRSKKEVFRMVVDRVWKKVKGWKEKFLSRAGKEILIKAVAQAIPTYIMSCYRLTDSVCTEIEAMLAKFWWGSKEGERKIHWLKWDKLTVSKREGGLGFRGIQDFNTSLLGKQFWRLLQADGSLLQRFFKGRYYPRCSITDASTGFKPSYAWRSIMSSKDLVMKGSRWRIGNGENVSIFGDRWIPTRPDFKPSARARVLNETSKVSSLIESNSASWNMDVLRENFCEEDVRHISSISLSHQLPADSLIWHYEIDGAYSVKTAYHIQRTLSHQNDPESSSTHNLFFWKQLWKLQVNPRIKNFLWRLFKDILPTKLNLLKKGIPSDGICPLCNSDQESSLHLFLYCDFARRTLFAGPLGIRTPGAGDIADWLSAIYKSKDMVMGQVIAIFLWKIWQVRNGVVFRNLKPCPGAVAMDIWNSIPEESVGCLSSRMSRQQADSALRRYEGWTVQTDAGCFDEGVVSFGCVIRDPTSNIFLAATKRIISITDPANAEAQAIRWALSVAKELGLKDFVLQSDAMTVVDCINGVVTNAELNPIILDCKLLMSSFNSVSVMFISRCVNTDAHQLVSIGKHSGTRTWTGFIPSTDPSVSWHGKMKTILGIGSAIMVALLMCVIFCCIRGKPSIQQVNFRYKTKNDKNIEAFFKENGALTQKKYKFSEIKKMTNSFEIKLGQGGFGVVYKGKLFNGCLVAVKILNASKRNGEDFINEIASITRTSHVNIVTLVGFCFEGSKKALVYEFMSNGSLDKFIYNKGPETIISVSWDNLYQIAKGIARGLEYLHRGCTTRILHFDIKPHNILLDENFSPKISDFGLAKLCPKKESIISMSDQRGTMGYVTPEVWNKHFGGVSHKSDVYNYGMMLLEMVGGRKNINAEASHTSEIYFPRWVFNKLEFGSDLRPGVVMDTEEDEIARKMTIVGLWCIQIFPNDRPTMSKVVEMLEVSTSSLEIPPMPLLSSPIRPVSES 1724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00278 1724 SMART serkin_6 1426 1699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00278 1724 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 480 762 IPR000477 -
Vivi4g00278 1724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1548 1560 IPR008271 GO:0004672|GO:0006468
Vivi4g00278 1724 Coils Coil 696 716 - -
Vivi4g00278 1724 SUPERFAMILY Protein kinase-like (PK-like) 1413 1701 IPR011009 -
Vivi4g00278 1724 Gene3D Endonuclease/exonuclease/phosphatase 1 236 IPR036691 -
Vivi4g00278 1724 FunFam PR5-like receptor kinase 1501 1710 - -
Vivi4g00278 1724 CDD RT_nLTR_like 494 762 - -
Vivi4g00278 1724 SUPERFAMILY DNase I-like 1 236 IPR036691 -
Vivi4g00278 1724 CDD RNase_H_like 1213 1328 IPR044730 -
Vivi4g00278 1724 Gene3D Phosphorylase Kinase; domain 1 1386 1500 - -
Vivi4g00278 1724 Pfam zinc-binding in reverse transcriptase 1020 1112 IPR026960 -
Vivi4g00278 1724 SUPERFAMILY Ribonuclease H-like 1208 1328 IPR012337 -
Vivi4g00278 1724 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 499 760 IPR000477 -
Vivi4g00278 1724 Gene3D Transferase(Phosphotransferase) domain 1 1501 1707 - -
Vivi4g00278 1724 Pfam Protein kinase domain 1431 1697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00278 1724 SUPERFAMILY DNA/RNA polymerases 396 773 IPR043502 -
Vivi4g00278 1724 Pfam Reverse transcriptase-like 1219 1330 IPR002156 GO:0003676|GO:0004523
Vivi4g00278 1724 ProSitePatterns Protein kinases ATP-binding region signature. 1432 1454 IPR017441 GO:0005524
Vivi4g00278 1724 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 101 1291 - -
Vivi4g00278 1724 Gene3D - 1209 1336 IPR036397 GO:0003676
Vivi4g00278 1724 ProSiteProfiles Protein kinase domain profile. 1426 1714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00278 1724 Pfam Endonuclease/Exonuclease/phosphatase family 5 229 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00278 Vivi-Chr4 6286605 6293999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00278 1356 1715 Receptor kinase-like Gene Family AT4G18250 52.717 3.58e-115 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g00278 Pkinase 6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00278 - - vvo:131596724 3486.43