Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00273 ATGCCGATTTTCTCTTTTTTATGTCACTGTTTTTCCACTGATGGAACTGGAAAGAAAAACAGCTCTTCATTAAGAGATTTTGAGGAGAAGGGTCGCAACAATTTCGTGGCAGTGAGTTCTGATAAGCCAAATGGTAATGATGAAATGGTGTCTGTGGATTCTAAGGTTTTGAGCAGAGGTAACGAATCAGTTTCTGTAAATGTGGTTTCTGAGTTACCAAGTGGTCAATCATTGTTGATTGATTCTGAGCTGCAAAACGACGGATGCAACAGTAGTGACTGTGAGATCTTCAAGTATTCTGAACTTGAAAAAGCTACCAATAAATTTGATGCTAGTAGAATACTTGGGAGTGGAGGCTATGGCACGGTTTACTCTGGAACACTTAAAGACGGGCGACTTGTAGCAGTAAAGCGCTTACACGAAGAGAAGTTCAAGATCTTAAAGTTACATGATAAGAAGCTTGAGGAGGAGACACTAAGAAAGTTCATCTATGAAGTTTCTATGTTAACTCGCATGAGGCATGAAAATCTTGTCCAACTCTATGGCTGCACTTCTCCTCAAACCCGCGAACTACTTCTCGTGCAAGAATATGTTCCTAATGGAACCCTGGCTCGTCGTCTTCATAAAGACACCTTCCCGTGGTCTACTCGATTAAATGTTGCATTACAAACCGCAAGTGCGTTGGCTTATCTTCATGCTTCCAATATTATCCACCGTGACGTGAAAACCAGTAATATTCTACTTGACGGAAGTTTGAATGCTAAAGTTGCGGATTTTGGATTGTCACGAATTGTCCCGTACGGGGCTACTCATATTACAACCGATCCCGCTGGAACTAGAGGTTATATTGATCCAGAGTATTACGAACATTGTCTTCTTTCGGATAAAAGCGATGTGTACAGCTTCGGTGTGATATTGGCCGAGTTGATATCGTCTTTGCCTGCATTTAACGAGGATGAAAAACAACCTTTTCTTTCGGATTTCGCTATGGATCACATCCTTAGAGGACAACTCGGGAAGCTTGTCGATCCAAATCTTGGATTTCAATCGGACAATTGGGTAAGTGAAACGGTAAGTGCAGTGGCAGAATTGGCTTTTGGATGTTTACAGCTTCAAAGAGATATGAGACCTTCCATGAGTGAGGTGTGGAATACTCTTGAAAGCATTAAAAGTGGAAACTCTCAAAAAGCACTTAAATTGGGTTCAAAAAATTGTTATAATGCTACCAAAGTTCACATTGTATCACGTTTGCCTGATGATTATTTTGACAATAAATAA 1278 0.4045 MPIFSFLCHCFSTDGTGKKNSSSLRDFEEKGRNNFVAVSSDKPNGNDEMVSVDSKVLSRGNESVSVNVVSELPSGQSLLIDSELQNDGCNSSDCEIFKYSELEKATNKFDASRILGSGGYGTVYSGTLKDGRLVAVKRLHEEKFKILKLHDKKLEEETLRKFIYEVSMLTRMRHENLVQLYGCTSPQTRELLLVQEYVPNGTLARRLHKDTFPWSTRLNVALQTASALAYLHASNIIHRDVKTSNILLDGSLNAKVADFGLSRIVPYGATHITTDPAGTRGYIDPEYYEHCLLSDKSDVYSFGVILAELISSLPAFNEDEKQPFLSDFAMDHILRGQLGKLVDPNLGFQSDNWVSETVSAVAELAFGCLQLQRDMRPSMSEVWNTLESIKSGNSQKALKLGSKNCYNATKVHIVSRLPDDYFDNK 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00273 425 Gene3D Phosphorylase Kinase; domain 1 80 197 - -
Vivi4g00273 425 ProSiteProfiles Protein kinase domain profile. 109 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00273 425 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Vivi4g00273 425 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 70 397 IPR044652 GO:0004672
Vivi4g00273 425 SMART serkin_6 109 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00273 425 SUPERFAMILY Protein kinase-like (PK-like) 91 387 IPR011009 -
Vivi4g00273 425 Pfam Protein kinase domain 111 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00273 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vivi4g00273 425 Gene3D Transferase(Phosphotransferase) domain 1 198 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00273 Vivi-Chr4 6124661 6127370 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00273 96 391 Receptor kinase-like Gene Family AT1G25390 50.658 4.95e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00273 Pkinase 3.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00273 - - tpra:123887372 671.389