Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00271 ATGAGGTTGGGGGAAATGGGGTTGGATCTCTGGATGTGCTGTTTCACTTCCACTTCTGACACATTTCGAAAGCAGACTGAATGGAAGTGGCAAATCTTCCCTTATCACAAACTTAAAATAGCCACAAATTATTTTCATCAAGCTCGGATTCTTGATAAGAAAGGCTCTGCCACAGTATATTATGGAAAACTTAAGAATGGTCGTGAGATTGCAGTACAAAGCTTTAAGGAGGACAAGTGCAACATATTGAAACAGTTCATCGAAGAAACTGTTATCCTAAATTTCATGCCCTACAAAAACCTTGTTACAATTTATGGATATTCCACTCATCAAAAGGAATTCTTGCTAGTACATGAATACCTGTCCAATGGGACTCTTGCTACTCATATTAAAGGCCAACCATCAGATAGCCGAACAACGTTAACTTGGCCAAACCGATTGGATATTGCAATTGATATAGCAAGTGCATTGAACTATCTTCACTACAAGGGCATTGTCCACCGTAATGTTAAGTCTAATAATATTTTCCTTGATATAAACTTTTGTGCTAAACTTGGTAACTTTCATTTGTCAAAGAAACTTGTTGTTGAAGCAACCGATGTTACGAGAGACTTGATAGGAACAAGTGGTTATATCGACCCAGAACTTGTGTCAAAAGGCTTACTTAGTGTTAAAAATGATGTTTATAGCTTTGGGGTGGTGTTATGTGAGCTTGTGTCATCCATGCTTGCAGAATATTATGTTCATAACGAAGAAGAAAGTCTAGCTACATTTTTAATGACAAAAGTTGAAAACCAAGCTTTGGTCGAGCTTTTGGATCCAAATCTTGGCTTTCAGTCAGACGTTAAGATCGACAAGATGATGACTGCTACGGCTGAGCTTGCATTTTGGTGTTTGCAATGTCCACAAGAATTAAGGCCGAACATGGAACAAGTGCTAGAGAGTCTCAATGGCATAAAACAAGGGAGATATGAGTTAAGCCCAATAAAAGCTTTCAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACAAACCATTTTGACACTTTCCTAGGAAAGGGAGGGTTCGGCAGTGTCTACTACGGAAAACTAAAAGACGGTAGAGAAGTTGGAATAAAACGTTTCCATGAAGAGACAAACAGAACAATTAAGCAATTCATGAAAGAAATTGAGATTGCAAGTCACTTGCGTCATCAAAATCTGGTTTTACTTTATGGCTGCAGTTCTCGTCATAGCGACAAGCACATGCTAGTGTATGAGTACATCTCTAATGGAACTCTTTCACAGCATCTCCATGGATCTTCAGGCAGTACGTTATCGTGGCCTAGTAGATTGAATATTGCCATTGAAACTGCAAAGGCCTTGGTATATCTTCATGACTCAGATTTTGGACTGTCGCGGTTTCTTCCGGACTATGTTACTCACGTTTCAACTCTTCCGGTTGGAACTCGTGCTTACATTGATCCAGATTACTTTGAAACTGGAAGGGTGAGTGACAAAAGTGATGTGTATAGCTTCGGGGTGATCTTATTCGAGCTTATATCATCCAAACCCGCAAGTTTAATGCAAGGAACGGAGAATGTGACTCTCGCCCAATTCGCAATGCATAAAATCTTAAACAAGAATTTACAAGGGCTAGTGGATCAAAGTCTTGCAATTTGTTTTAATGAAAATGTTGTGGAAATGATAACAGCGGTGACAGAGTTAGCATTTCAGTGTGTCCAGTGTCCTAAGGAACTCAGGCCAACCATGAAACAGGTGTTACAAACTCTACAGGGCATAAGCAAGGGGACATGGGGATTCAACCAAATAACATAG 1818 0.396 MRLGEMGLDLWMCCFTSTSDTFRKQTEWKWQIFPYHKLKIATNYFHQARILDKKGSATVYYGKLKNGREIAVQSFKEDKCNILKQFIEETVILNFMPYKNLVTIYGYSTHQKEFLLVHEYLSNGTLATHIKGQPSDSRTTLTWPNRLDIAIDIASALNYLHYKGIVHRNVKSNNIFLDINFCAKLGNFHLSKKLVVEATDVTRDLIGTSGYIDPELVSKGLLSVKNDVYSFGVVLCELVSSMLAEYYVHNEEESLATFLMTKVENQALVELLDPNLGFQSDVKIDKMMTATAELAFWCLQCPQELRPNMEQVLESLNGIKQGRYELSPIKAFKIFHHAELEEATNHFDTFLGKGGFGSVYYGKLKDGREVGIKRFHEETNRTIKQFMKEIEIASHLRHQNLVLLYGCSSRHSDKHMLVYEYISNGTLSQHLHGSSGSTLSWPSRLNIAIETAKALVYLHDSDFGLSRFLPDYVTHVSTLPVGTRAYIDPDYFETGRVSDKSDVYSFGVILFELISSKPASLMQGTENVTLAQFAMHKILNKNLQGLVDQSLAICFNENVVEMITAVTELAFQCVQCPKELRPTMKQVLQTLQGISKGTWGFNQIT 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00271 605 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 332 598 IPR044652 GO:0004672
Vivi4g00271 605 Gene3D Phosphorylase Kinase; domain 1 19 120 - -
Vivi4g00271 605 Gene3D Phosphorylase Kinase; domain 1 331 421 - -
Vivi4g00271 605 ProSiteProfiles Protein kinase domain profile. 45 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00271 605 Pfam Protein kinase domain 461 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00271 605 SUPERFAMILY Protein kinase-like (PK-like) 25 324 IPR011009 -
Vivi4g00271 605 ProSiteProfiles Protein kinase domain profile. 345 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00271 605 Pfam Protein tyrosine and serine/threonine kinase 347 460 IPR001245 GO:0004672|GO:0006468
Vivi4g00271 605 Pfam Protein tyrosine and serine/threonine kinase 57 272 IPR001245 GO:0004672|GO:0006468
Vivi4g00271 605 SUPERFAMILY Protein kinase-like (PK-like) 327 594 IPR011009 -
Vivi4g00271 605 Gene3D Transferase(Phosphotransferase) domain 1 121 330 - -
Vivi4g00271 605 Gene3D Transferase(Phosphotransferase) domain 1 422 599 - -
Vivi4g00271 605 FunFam Lectin-domain containing receptor kinase A4.3 121 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00271 Vivi-Chr4 6101197 6103880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00271 334 594 Receptor kinase-like Gene Family AT1G25390 50.000 9.66e-84 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00271 PK_Tyr_Ser-Thr 3.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00271 - - mtr:25496807 861.677