Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00268 ATGAACTTAATATTCCCTCTAAACATAATCTCCTCCTCCTCCCTTTCTTATTTTCTTCTTTGTTCTAAAAGAATGGATAATCATATCAATAGTCTTATGCCCATAAATTTTAGATACATATTTTTCTTCTTGTTATTAATAATAAGCACTTTTTGCTCACAACTATCCTACTCTCAATCCCAACCTCAATCAATTTATGATTACTCCATTTGTAGAGATCTAAACCATTCCTACAACTGTGGCAACCTATCCTACATATCTTACCCATTCTGGGGGCAGAATCGTCCTATTCAATGTGGCGCAGGCAAACCATTTCAGCTTCACTGCCACAACAACCAAGATACCACTATTCAATTATCCTACCAAAATTTCACAGTCATTGAAATTAACACAAATCATCACATCATCAAACTCAAAAGAACAGACCTTTCCCAAAATCTATGCTCTCCTCAATTTGATCATATTTATTTGACTCCAACTTTGTTTCAATATGCTGATACTTATTTGTCTCCAACTCTGGTTCAATATCTCCCACAAGTCAAAAACATCACCATATACTATAACTGTGACCCATCTCCATATTTTCCTAAAGTTTCTCTATGTGGAGCTCAGAATTATGCTTTTTGTCCTGTTGGTGATTATGCAAATAAGTTTCTTGAAGTATCAAGAAATTGCAGACAATATATACAAGTGCCTGTAGGAGGAGATTTTCCTATTGAGAATGGTTCTTATTACTATTTAAGTCGTGAAGTTCTTGAAAAAGGTTTGGATAAGGGGTTTGAGGTTAAATATAGTGTGAATGAGGAGTGTTTACAGTGTTTGGGATATCAAGAAGGAGGTTGTGTGAGTGATGATTTTGATAAACATGCAACATCCACTTGCTATTATCATGATTGTCCTGATGGATCTATTGCTTTTTCCTCACAATGTTCTTCTGATCAGAAAAGTAAGCAGGTGAGCTGGCATGGAAAAATGAAAACCATTCTAGGTATTGGAAGTGCAATAATGGTAGCATTGCTGATGTGCGTCATATTTTGTTGTATTAGAGGTCGTAAAAAAGCACTTGTATATGAATTTATGTCTAATGGTTCTCTAGACAAATTTATTTATAATAAGGGGCCTGAAACCATTATATCTGTAAGTTGGGATAATTTGTATCAAATTGCGAAAGGAATAGCTCGTGGGCTAGAGTATTTGCATAGAGGATGCACCACTCGAATTTTACATTTTGACATTAAACCACATAATATTCTTTTGGATGAGAACTTTAGTCCAAAGATTTCTGATTTTGGACTTGCAAAGCTCTGCCCTAAAAAAGAGAGCATTATTTCGATGTCGGATCAAAGAGGGACAATGGGATATGTAGCTCCAGAAGTGTGGAATAGACATTTTGGAGGAGTTTCACATAAGTCTGATGTTTATAGTTATGGAATGATGTTGTTAGAAATGGTGGGTGGGAGGAAAAACATTAATGCTGATGCAAGTCACACAAGTGAGATATATTTTCCTCATTGGGTATACAATAAACTTGAGTTTGGTAGTGATTTGAGACCTGATATAGTAATGGATACAGAAGAAGATGAGATTGCAAGGAAAATGACCATTGTGGGTTTATGGTGTATTCAAATATTTCCTAATGATAGGCCTACTATGAGTAAAGTGGTTGAAATGTTAGAAGTTAGCACAAGTTCTTTAGAAATACCACCAATGCCATTACTTTCCTCTCCTATTAGACCAGTATCAGAGTCTTGA 1752 0.3533 MNLIFPLNIISSSSLSYFLLCSKRMDNHINSLMPINFRYIFFFLLLIISTFCSQLSYSQSQPQSIYDYSICRDLNHSYNCGNLSYISYPFWGQNRPIQCGAGKPFQLHCHNNQDTTIQLSYQNFTVIEINTNHHIIKLKRTDLSQNLCSPQFDHIYLTPTLFQYADTYLSPTLVQYLPQVKNITIYYNCDPSPYFPKVSLCGAQNYAFCPVGDYANKFLEVSRNCRQYIQVPVGGDFPIENGSYYYLSREVLEKGLDKGFEVKYSVNEECLQCLGYQEGGCVSDDFDKHATSTCYYHDCPDGSIAFSSQCSSDQKSKQVSWHGKMKTILGIGSAIMVALLMCVIFCCIRGRKKALVYEFMSNGSLDKFIYNKGPETIISVSWDNLYQIAKGIARGLEYLHRGCTTRILHFDIKPHNILLDENFSPKISDFGLAKLCPKKESIISMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINADASHTSEIYFPHWVYNKLEFGSDLRPDIVMDTEEDEIARKMTIVGLWCIQIFPNDRPTMSKVVEMLEVSTSSLEIPPMPLLSSPIRPVSES 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00268 583 SMART serkin_6 295 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00268 583 FunFam PR5-like receptor kinase 360 569 - -
Vivi4g00268 583 Gene3D Transferase(Phosphotransferase) domain 1 310 566 - -
Vivi4g00268 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Vivi4g00268 583 Pfam Wall-associated receptor kinase C-terminal 218 298 IPR032872 -
Vivi4g00268 583 PANTHER RUST RESISTANCE KINASE LR10-RELATED 331 574 IPR045874 GO:0004672
Vivi4g00268 583 Pfam Protein kinase domain 350 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00268 583 Pfam Wall-associated receptor kinase galacturonan-binding 79 139 IPR025287 GO:0030247
Vivi4g00268 583 ProSiteProfiles Protein kinase domain profile. 268 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00268 583 SUPERFAMILY Protein kinase-like (PK-like) 343 560 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00268 Vivi-Chr4 6094653 6098839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00268 72 583 Receptor kinase-like Gene Family AT1G66930 35.315 8.37e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g00268 Pkinase 6.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00268 - - vvo:131596724 469.544