Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00267 ATGAACTTAATATTCCCTCTAAACATAATCTCCTCCTCCTCCCTTTCTTATTTTCTTCTTTGTTCTAAAAGAATGGATAATCATATCAATAGTCTTATGCCCATAAATTTTAGATACATATTTTTCTTCTTGTTATTAATAATAAGCACTTTTTGCTCACAACTATCCTACTCTCAATCCCAACCTCAATCAATTTATGATTACTCCATTTGTAGAGATCTAAACCATTCCTACAACTGTGGCAACCTATCCTACATATCTTACCCATTCTGGGGGCAGAATCGTCCTATTCAATGTGGCGCAGGCAAACCATTTCAGCTTCACTGCCACAACAACCAAGATACCACTATTCAATTATCCTACCAAAATTTCACAGTCATTGAAATTAACACAAATCATCACATCATCAAACTCAAAAGAACAGACCTTTCCCAAAATCTATGCTCTCCTCAATTTGATCATATTTATTTGACTCCAACTTTGTTTCAATATGCTGATACTTATTTGTCTCCAACTCTGGTTCAATATCTCCCACAAGTCAAAAACATCACCATATACTATAACTGTGACCCATCTCCATATTTTCCTAAAGTTTCTCTATGTGGAGCTCAGAATTATGCTTTTTGTCCTGTTGGTGATTATGCAAATAAGTTTCTTGAAGTATCAAGAAATTGCAGACAATATATACAAGTGCCTGTAGGAGGAGATTTTCCTATTGAGAATGGTTCTTATTACTATTTAAGTCGTGAAGTTCTTGAAAAAGGTTTGGATAAGGGGTTTGAGGTTAAATATAGTGTGAATGAGGAGTGTTTACAGTGTTTGGGATATCAAGAAGGAGGTTGTGTGAGTGATGATTTTGATAAACATGCAACATCCACTTGCTATTATCATGATTGTCCTGATGGATCTATTGCTTTTTCCTCACAATGTTCTTCTGATCAGAAAAGTAAGCAGGTGAGCTGGCATGGAAAAATGAAAACCATTCTAGGTATTGGAAGTGCAATAATGGTAGCATTGCTGATGTGCGTCATATTTTGTTGTATTAGAGGTAAGCGATCAATACAACAAGTAAATTTCTGGTATAAAACAAAAAATGATAAAAATATCGAAGCATTTTTCAAAGAAAATGGAGCTCTAACGCAAAAGAAATATAAATTTTCTGAAATAAAGAAAATGACAAATTCATTCGAAATTAAACTTGGTCAAGGGGGTTTTGGGGTTGTGTATAAAGGAAAATTATTCAATGGTTGTCTTGTGGCGGTGAAGATATTGAATGCATCAAAAAGAAATGGTGAAGATTTTATTAATGAGATTGCAAGTATTACTAGAACCTCACATGTTAATATTGTCACTCTTCTTGGATTTTGTTTTGAAGGTCGTAAAAAAGCACTTGTATATGAATTTATGTCTAATGGTTCTCTAGACAAATTTATTTATAATAAGGGGCCTGAAACCATTATATCTGTAAGTTGGGATAATTTGTATCAAATTGCGAAAGGAATAGCTCGTGGGCTAGAGTATTTGCATAGAGGATGCACCACTCGAATTTTACATTTTGACATTAAACCACATAATATTCTTTTGGATGAGAACTTTAGTCCAAAGATTTCTGATTTTGGACTTGCAAAGCTCTGCCCTAAAAAAGAGAGCATTATTTCGATGTCGGATCAAAGAGGGACAATGGGATATGTAGCTCCAGAAGTGTGGAATAGACATTTTGGAGGAGTTTCACATAAGTCTGATGTTTATAGTTATGGAATGATGTTGTTAGAAATGGTGGGTGGGAGGAAAAACATTAATGCTGATGCAAGTCACACAAGTGAGATATATTTTCCTCATTGGGTATACAATAAACTTGAGTTTGGTAGTGATTTGAGACCTGATATAGTAATGGATACAGAAGAAGATGAGATTGCAAGGAAAATGACCATTGTGGGTTTATGGTGTATTCAAATATTTCCTAATGATAGGCCTACTATGAGTAAAGTGGTTGAAATGTTAGAAGTTAGCACAAGTTCTTTAGAAATACCACCAATGCCATTACTTTCCTCTCCTATTAGACCAGTATCAGAGTCTTGA 2079 0.3444 MNLIFPLNIISSSSLSYFLLCSKRMDNHINSLMPINFRYIFFFLLLIISTFCSQLSYSQSQPQSIYDYSICRDLNHSYNCGNLSYISYPFWGQNRPIQCGAGKPFQLHCHNNQDTTIQLSYQNFTVIEINTNHHIIKLKRTDLSQNLCSPQFDHIYLTPTLFQYADTYLSPTLVQYLPQVKNITIYYNCDPSPYFPKVSLCGAQNYAFCPVGDYANKFLEVSRNCRQYIQVPVGGDFPIENGSYYYLSREVLEKGLDKGFEVKYSVNEECLQCLGYQEGGCVSDDFDKHATSTCYYHDCPDGSIAFSSQCSSDQKSKQVSWHGKMKTILGIGSAIMVALLMCVIFCCIRGKRSIQQVNFWYKTKNDKNIEAFFKENGALTQKKYKFSEIKKMTNSFEIKLGQGGFGVVYKGKLFNGCLVAVKILNASKRNGEDFINEIASITRTSHVNIVTLLGFCFEGRKKALVYEFMSNGSLDKFIYNKGPETIISVSWDNLYQIAKGIARGLEYLHRGCTTRILHFDIKPHNILLDENFSPKISDFGLAKLCPKKESIISMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINADASHTSEIYFPHWVYNKLEFGSDLRPDIVMDTEEDEIARKMTIVGLWCIQIFPNDRPTMSKVVEMLEVSTSSLEIPPMPLLSSPIRPVSES 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00267 692 SMART serkin_6 394 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00267 692 SUPERFAMILY Protein kinase-like (PK-like) 381 669 IPR011009 -
Vivi4g00267 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Vivi4g00267 692 Gene3D Phosphorylase Kinase; domain 1 355 468 - -
Vivi4g00267 692 Pfam Protein kinase domain 399 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00267 692 Pfam Wall-associated receptor kinase galacturonan-binding 79 139 IPR025287 GO:0030247
Vivi4g00267 692 PANTHER RUST RESISTANCE KINASE LR10-RELATED 364 683 IPR045874 GO:0004672
Vivi4g00267 692 FunFam PR5-like receptor kinase 469 678 - -
Vivi4g00267 692 ProSitePatterns Protein kinases ATP-binding region signature. 400 422 IPR017441 GO:0005524
Vivi4g00267 692 ProSiteProfiles Protein kinase domain profile. 394 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00267 692 CDD STKc_IRAK 400 668 - -
Vivi4g00267 692 Pfam Wall-associated receptor kinase C-terminal 218 298 IPR032872 -
Vivi4g00267 692 Gene3D Transferase(Phosphotransferase) domain 1 469 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00267 Vivi-Chr4 6094653 6098840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00267 73 692 Receptor kinase-like Gene Family AT1G66910 39.482 1.46e-134 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g00267 Pkinase 7.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00267 - - tpra:123887353 801.201