Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00266 ATGACTCCACATTTTCTTCCATCTCATTTTTCCTTCATCGTCAACTTACTTCTCTTTCTCCAATTCTTCTTCTTAATCCCACTGCATGTCACTAGTGATAGTGAAAGCTACAAATCATGTGCACCTTTTACATGTGGAAGTTTCACCAACATCACATATCCATTCTGGAATATCAACAATCAACCAAGTTATTGTGGCCATCCAAACTTCACGCTTGATTGTCAGAAAAACAATTTGACTATTGACATCAGCTCACAAAAGTTTCATATCATTGGCATAAATCAAACATCACAACTTTTGAAGATTGCAAGGTTGGATTTATGGAGTTATGATGCTGCAAATGTTCCTTCTTGTCCTGATACCAATGTAAACTTGAACTTGGATTTCTTCAAGTACACTTCCAATGATGAGAACTATACTCTATTGTCAGAGTGCGATCCTCTTCCTAATGATTCATTCGGATCATCTTCTTTGAGTTCAGAAGTTTCTCAACAGATTTCATGCCTTATAGATAGTAAACCTCAAGATGCATATTTAGTACTAAGTACTAAAATGAAAGATTTTGCGGTCCTAGATTGTAAGAACGATATCCAAGTTTATGGACCAAGAAGCTCTATCATAGAAGAGTTCTCCGATACAGTGGTGAATGTTATAAAGGAAGGATTTGAGGTTAAGTGGAGTGGTGTGGACGACGATATATGTAATTATTGCAAGAAATTTGGCGGGAGGTGTGGATACAATACAACCAAAAGTGCATTTATGTGTATTTGTCCTAATCAACAATCTTATGGTGATTGCGGCTTTTGTCGCCAGAATTCAACAACTGAGAGTTGGCCGGATGAGTCGGGTTGCATAGGATCTAAATTGTATAATTCTGCAGCACCATCACCTTTACCAGCATCATCTTATGGAGATACACCAGTGCAAGCATTAGTACCATTACCATCTTCTAATTCAGATTCCAAAAACTCTCGTGGCACTTCGAGCTCATTGAATTTGAAGAGGAAACTCATTGTTGGCATTGCTGGAAGTGCAGTAATGGTAGCATTGTTGATGTGCATCATAATTTGTTATATTAAAGGTAAGTCATCAATACAACAACTAAAATTCCAGTTTAAGACAAAGAATGATAAAAACATCGAAGCATTTTTTAAAGAACATGGAGCTTTGACGCAAAAGAAATATAAATTTTCTGAAATAAAGAAAATGACAAATTCTTTCAAAATTAAACTTGGTCAAGGGGGTTTTGGTGTTGTGTACAAAGGAAAATTATTCAATGGTTGTCCTGTGGCGGTGAAGATATTGAATGCATCAAAAAGAAATGGTGAAGAATTTATTAATGAGGTTGCAAGTATTACTAGAACCTCACATGTTAATGTTGTCAGTCTGATTGGATTTTGTTTTGAAGGGCGTAAAAAAGCACTTGTATATGAATTTATGTCTAACGGTTCACTTGACAAATTTATTTACAATAAGGGACCTGAAACAATTGAATCTTTAAGTTGGGATAATTTGCATCAAATTGCGAAAGGAATAGCTCGTGGGCTAGAGTACTTGCACAGAGGATGCACCACTCGAATTTTACATTTTGACATAAAACCACATAACATTCTTTTGGATGAAAACTTTAATCCAAAGATTTCTGATTTCGGACTTGCAAAGCTTTGCCCTAGAAAAGAGAGCATAATATCAATGTCAGATCAAAGAGGAACGATGGGATATGTAGCTCCAGAAGTGTGGAATAGACATTTTGGAGGAGTTTCGTATAAGTCGGATGTTTATAGTTTTGGAATGATGTTGTTAGAAATGGTGGGTGGAAGAAAAAATATTAATGCTGATGCAAGTCACACAAGTGAGATATACTTTCCTCACTGGGTATACAGTAGGCTTGAGTTTGAAAGTGATTTGAGACCTGATGGAGTAATGGATACAGAAGAAGATGAGATTGCAAGGAGAATGACCATTGTGGGTTTGTGGTGTATTCAAACATTACCTAATGATAGGCCTACGATGAGTAAAGTGGTTGAAATGTTAGAAGTTAGCATGAATTCATTGAAAGTACCACCGAAACCATTACTTTCTTCTCCTACTAGATCATTATCTGAGTCTTAA 2112 0.3613 MTPHFLPSHFSFIVNLLLFLQFFFLIPLHVTSDSESYKSCAPFTCGSFTNITYPFWNINNQPSYCGHPNFTLDCQKNNLTIDISSQKFHIIGINQTSQLLKIARLDLWSYDAANVPSCPDTNVNLNLDFFKYTSNDENYTLLSECDPLPNDSFGSSSLSSEVSQQISCLIDSKPQDAYLVLSTKMKDFAVLDCKNDIQVYGPRSSIIEEFSDTVVNVIKEGFEVKWSGVDDDICNYCKKFGGRCGYNTTKSAFMCICPNQQSYGDCGFCRQNSTTESWPDESGCIGSKLYNSAAPSPLPASSYGDTPVQALVPLPSSNSDSKNSRGTSSSLNLKRKLIVGIAGSAVMVALLMCIIICYIKGKSSIQQLKFQFKTKNDKNIEAFFKEHGALTQKKYKFSEIKKMTNSFKIKLGQGGFGVVYKGKLFNGCPVAVKILNASKRNGEEFINEVASITRTSHVNVVSLIGFCFEGRKKALVYEFMSNGSLDKFIYNKGPETIESLSWDNLHQIAKGIARGLEYLHRGCTTRILHFDIKPHNILLDENFNPKISDFGLAKLCPRKESIISMSDQRGTMGYVAPEVWNRHFGGVSYKSDVYSFGMMLLEMVGGRKNINADASHTSEIYFPHWVYSRLEFESDLRPDGVMDTEEDEIARRMTIVGLWCIQTLPNDRPTMSKVVEMLEVSMNSLKVPPKPLLSSPTRSLSES 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00266 703 FunFam PR5-like receptor kinase 480 690 - -
Vivi4g00266 703 Pfam Protein kinase domain 410 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00266 703 Pfam Wall-associated receptor kinase C-terminal 189 259 IPR032872 -
Vivi4g00266 703 ProSiteProfiles Protein kinase domain profile. 405 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00266 703 Gene3D Transferase(Phosphotransferase) domain 1 480 687 - -
Vivi4g00266 703 SUPERFAMILY Protein kinase-like (PK-like) 392 680 IPR011009 -
Vivi4g00266 703 SMART serkin_6 405 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00266 703 CDD STKc_IRAK 411 679 - -
Vivi4g00266 703 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Vivi4g00266 703 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Vivi4g00266 703 PANTHER RUST RESISTANCE KINASE LR10-RELATED 376 695 IPR045874 GO:0004672
Vivi4g00266 703 FunFam serine/threonine-protein kinase PBS1-like 373 479 - -
Vivi4g00266 703 Gene3D Phosphorylase Kinase; domain 1 365 479 - -
Vivi4g00266 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00266 Vivi-Chr4 6080973 6089330 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00266 19 703 Receptor kinase-like Gene Family AT1G66910 36.643 2.38e-136 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g00266 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00266 - - psat:127114885 1227.62