Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00264 ATGGCTTCATCTTTTCTTCAACCTCATTGTTCCTTCCTCTTCAACATCTTTCTCTTCCTACTCTTCTTCTTATTCCCAATACATGTCAATAGTGATGCTAAAAGCTTCAAATTATGTGCACCTTTTACCTGTGGAAGTTTCACCAAAATCACTTATCCATTTTGGAATGTTAACAATCAACCAAATTATTGTGGCCATCCAAACTTCACGCTCGATTGTCAGCAAAACAACTTGACTATTGACATCAACTCACAACAATTTCATATCATTGACATAAACCAAGCATCACAACTTTTGAAGATTGCAAGGTTGGATTTATGGAGTTATGATGCTGCAAATGTTCCTTCTTGTCCTGATACCAATGTAAACTTGAATTCGGATTTCTTCAAGTACACTTCCAACGATGAGAACTATACTCTATTGTCCGAGTGTGATCCTTTTCCTAATGATTCATACGGATCATCTCCTTTGAGATCAGAAGTTTCTCAACAGATTTCTTGCCTCGTAGATAGTAAACCTCAAGATGCATATTTAGTACTAAATACTAAAATGCCGGATTTCGCAGTCCTAGATTGTAAGAACGATATCAAAGTTTATGGACCAAGAATAGAAGAGTCCTCCGATACAGTGGTGAATGTTTTAAAGGAAGGATTTGAGGTTACGTGGAGTGGCGTGGACGACGATATATGTAATTATTGCAAGAAATATGGTGGGAGATGTGGATACAATACAACCAAAAGTGCATTTATGTGTATTTGTCCTAATCAACAATCTTATGGTGATTGCGGATTTTGTCGCGAGAATTCCACAACTGAGATTTGGCCCGATGAGTCGGGTTGCATAGGATCCAAGTTGTTTAAATCAGTGGCACCATCACCTTTGCCAGCATCATCATATGGAGATACACCATTTCCAGAATTAGTACCACCTCCTAATTCAGATTCCATAAACTCTCGTGGAACTCCGAGTAAACAGAAATTGACGAGGAATCTCGTCATTGGTGTTGGCTCTGCTGTTTTAGTCGCATTTGCAGCGTTCATAGCCATATATTTCTATAAGCGCCGGAAGAATAAGAATAAAACTTACGCAAAGTCATATGTACAATCTCGCAGCCTCTCTTCCGAGCTCACTTCAAAGGATCTTGAAAGTGGAAGTCAATTCTTTGAAAGAAGCCAAAACTTTGGAGTGCAGCATTTTACTTATAGTGAACTTGAAGAAGCCACAAACTTCTTTGATCCGTCCAAAGAACTCGGAGAAGGAGGCTTTGGAACGGTGTATTATGGAAAACTGTATGATGGGCGTAGTGTTGCGGTGAAGAGGTTATTTGAGAACAATTACAAAAGAGTTGAGCAATTCAAGAATGAAGTTGAAATCTTGGCATCATTAGTCCATCCAAATCTCGTGTCTCTATATGGATGCACTTCACGTCACAGTCGCGAGCTTCTACTTGTCTACGAGTATGTTTCTAATGGAACCGTCGCTGATCATCTCCGTGGTAAAGAAGCGAAACATGGAAAACTTACTTGGCCTATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCGGAAATCATTCACCGAGATATAAAAACAAATAATATTCTTCTCGACGCTCATTTTCATGTCAAGGTAGCGGATTTTGGACTCTCGCGCCTTTTTCCATACGATCAAACTCATGTTTCAACGGCTCCACAAGGGACACCGGGCTATGTGGATCCTGAATACCATCAGTGCTATCAACTTACGGATAAAAGTGATGTCTATAGCTTTGGAGTTGTGATGATTGAGTTGATATCGTCTTTGCCTGCCGTTGATATAACAAGACATAGGCATGAAATCAATTTGGCTAGCATGGCTCTCAACAGAATTCAAAACCAAGCATTGCATGAAATTGTGGATCCTACGCTCGGTTTTGAATCGGATTCTAAGGTAAAGAAAATGATCGTTGCCATGGGCGAGTTAGCGTTTCAATGTCTGCAAAGTTCGAAAGATATGAGACCTACCATGGACGAAGTGTTGGATAGTTTAAAGGATATTCAAAGTGATGGTAAGCATAAAAGCAAACCCGAGGTAATGGACATTTCAAATTTATCTGATGACGCTGTGCTGCTGAATAATGTTCCACCTCCACTATCGCCTGATTCAAATGTTAGGAGCAATTATACAACGCCGAATACTAGTGGATAA 2208 0.3972 MASSFLQPHCSFLFNIFLFLLFFLFPIHVNSDAKSFKLCAPFTCGSFTKITYPFWNVNNQPNYCGHPNFTLDCQQNNLTIDINSQQFHIIDINQASQLLKIARLDLWSYDAANVPSCPDTNVNLNSDFFKYTSNDENYTLLSECDPFPNDSYGSSPLRSEVSQQISCLVDSKPQDAYLVLNTKMPDFAVLDCKNDIKVYGPRIEESSDTVVNVLKEGFEVTWSGVDDDICNYCKKYGGRCGYNTTKSAFMCICPNQQSYGDCGFCRENSTTEIWPDESGCIGSKLFKSVAPSPLPASSYGDTPFPELVPPPNSDSINSRGTPSKQKLTRNLVIGVGSAVLVAFAAFIAIYFYKRRKNKNKTYAKSYVQSRSLSSELTSKDLESGSQFFERSQNFGVQHFTYSELEEATNFFDPSKELGEGGFGTVYYGKLYDGRSVAVKRLFENNYKRVEQFKNEVEILASLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLRGKEAKHGKLTWPIRMNIAVETASALKYLHISEIIHRDIKTNNILLDAHFHVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVMIELISSLPAVDITRHRHEINLASMALNRIQNQALHEIVDPTLGFESDSKVKKMIVAMGELAFQCLQSSKDMRPTMDEVLDSLKDIQSDGKHKSKPEVMDISNLSDDAVLLNNVPPPLSPDSNVRSNYTTPNTSG 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00264 735 SUPERFAMILY Protein kinase-like (PK-like) 390 683 IPR011009 -
Vivi4g00264 735 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Vivi4g00264 735 ProSiteProfiles Protein kinase domain profile. 411 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00264 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Vivi4g00264 735 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 732 IPR044652 GO:0004672
Vivi4g00264 735 SMART serkin_6 411 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00264 735 MobiDBLite consensus disorder prediction 300 323 - -
Vivi4g00264 735 MobiDBLite consensus disorder prediction 716 735 - -
Vivi4g00264 735 ProSitePatterns Protein kinases ATP-binding region signature. 417 439 IPR017441 GO:0005524
Vivi4g00264 735 Pfam Wall-associated receptor kinase C-terminal 192 255 IPR032872 -
Vivi4g00264 735 CDD STKc_IRAK 417 686 - -
Vivi4g00264 735 Gene3D Transferase(Phosphotransferase) domain 1 488 700 - -
Vivi4g00264 735 Gene3D Phosphorylase Kinase; domain 1 384 487 - -
Vivi4g00264 735 Pfam Protein kinase domain 414 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00264 735 MobiDBLite consensus disorder prediction 711 735 - -
Vivi4g00264 735 FunFam Wall-associated receptor kinase-like 20 488 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00264 Vivi-Chr4 6058100 6065489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00264 312 735 Receptor kinase-like Gene Family AT1G25390 52.360 1.46e-143 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00264 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00264 - - mtr:25496819 1018.84