Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00263 ATGGAAAATCATATCAATATTCCTATGATCATCTCTTTCTTCTTCTTCTTGTTGTTATTAATAATCACTTTTTTCCCACAACTATCCCACTCTCTACCACAACCACAACTACCTCAAACCTTAAACAGTTATTCAATTTGTAAGGAACAATCTTACAACTGCGGAAATATCAACAATATCTTTTATCCATTTTGGGGACAAAATAGTTCTACTTTCTGTGGTGCCGGAAGCCCGTTTTACTTAAACTGCTACAAAAACGTTACTACCATTCTATTATTCTCACAAAATTTCACAGTACTTGACATCAACACTGAGAAATATACAATCAAACTCAAGAGAACAGACCTGTCTCAAAATCTATGTTCTCCTCTATTTGATGATATTGGTTTTTCTTCTTCACCTCTGTTTCACTATCTCCCACAAGTCAAAATCATCTACATATACTTCAATTGTCCTTCCACTTTCTCTCAACTTTTACCTATAGATTCTATATGTGGATCTCAGAATCAAGCATTTGATTCTATTCATTATGATGATAATCTGTCAAAGGATTGCGAGGCACATATTCAAGTGCCAGCAGGAGAAGATTTTTCCATGGAGAAAAATTATATTGAGCGTGATGAACTTGTTAGTGGCTTGGATAAGGGGTTTGAGGTGATCTATAGTGTTAGTGGGGAATGTTTAGCGTGTTTGGGAAATCAAGAAGGTGATTGTAGATTGAAAAACATCAATGATTTTGAGTCCTCTTGCTATTATTGCCCAGATGGATCCCATGCTTCTTCAACACAGTGTCCTTTTCATCACAGTAGTAAACAGAAATTGACGAGGAATCTCGTCATTGGTGTTGGCTCTGCTGTTTTAGTCGCATTTGCAGCGTTCATAGCCATATATTTCTATAAGCGCCGGAAGAATAAGAATAAAACTTACGCAAAGTCATATGTACAATCTCGCAGCCTCTCTTCCGAGCTCACTTCAAAGGATCTTGAAAGTGGAAGTCAATTCTTTGAAAGAAGCCAAAACTTTGGAGTGCAGCATTTTACTTATAGTGAACTTGAAGAAGCCACAAACTTCTTTGATCCGTCCAAAGAACTCGGAGAAGGAGGCTTTGGAACGGTGTATTATGGAAAACTGTATGATGGGCGTAGTGTTGCGGTGAAGAGGTTATTTGAGAACAATTACAAAAGAGTTGAGCAATTCAAGAATGAAGTTGAAATCTTGGCATCATTAGTCCATCCAAATCTCGTGTCTCTATATGGATGCACTTCACGTCACAGTCGCGAGCTTCTACTTGTCTACGAGTATGTTTCTAATGGAACCGTCGCTGATCATCTCCGTGGTAAAGAAGCGAAACATGGAAAACTTACTTGGCCTATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCGGAAATCATTCACCGAGATATAAAAACAAATAATATTCTTCTCGACGCTCATTTTCATGTCAAGGTAGCGGATTTTGGACTCTCGCGCCTTTTTCCATACGATCAAACTCATGTTTCAACGGCTCCACAAGGGACACCGGGCTATGTGGATCCTGAATACCATCAGTGCTATCAACTTACGGATAAAAGTGATGTCTATAGCTTTGGAGTTGTGATGATTGAGTTGATATCGTCTTTGCCTGCCGTTGATATAACAAGACATAGGCATGAAATCAATTTGGCTAGCATGGCTCTCAACAGAATTCAAAACCAAGCATTGCATGAAATTGTGGATCCTACGCTCGGTTTTGAATCGGATTCTAAGGTAAAGAAAATGATCGTTGCCATGGGCGAGTTAGCGTTTCAATGTCTGCAAAGTTCGAAAGATATGAGACCTACCATGGACGAAGTGTTGGATAGTTTAAAGGATATTCAAAGTGATGGTAAGCATAAAAGCAAACCCGAGGTAATGGACATTTCAAATTTATCTGATGACGCTGTGCTGCTGAATAATGTTCCACCTCCACTATCGCCTGATTCAAATGTTAGGAGCAATTATACAACGCCGAATACTAGTGGATAA 2049 0.3875 MENHINIPMIISFFFFLLLLIITFFPQLSHSLPQPQLPQTLNSYSICKEQSYNCGNINNIFYPFWGQNSSTFCGAGSPFYLNCYKNVTTILLFSQNFTVLDINTEKYTIKLKRTDLSQNLCSPLFDDIGFSSSPLFHYLPQVKIIYIYFNCPSTFSQLLPIDSICGSQNQAFDSIHYDDNLSKDCEAHIQVPAGEDFSMEKNYIERDELVSGLDKGFEVIYSVSGECLACLGNQEGDCRLKNINDFESSCYYCPDGSHASSTQCPFHHSSKQKLTRNLVIGVGSAVLVAFAAFIAIYFYKRRKNKNKTYAKSYVQSRSLSSELTSKDLESGSQFFERSQNFGVQHFTYSELEEATNFFDPSKELGEGGFGTVYYGKLYDGRSVAVKRLFENNYKRVEQFKNEVEILASLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLRGKEAKHGKLTWPIRMNIAVETASALKYLHISEIIHRDIKTNNILLDAHFHVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVMIELISSLPAVDITRHRHEINLASMALNRIQNQALHEIVDPTLGFESDSKVKKMIVAMGELAFQCLQSSKDMRPTMDEVLDSLKDIQSDGKHKSKPEVMDISNLSDDAVLLNNVPPPLSPDSNVRSNYTTPNTSG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00263 682 Gene3D Phosphorylase Kinase; domain 1 331 434 - -
Vivi4g00263 682 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 679 IPR044652 GO:0004672
Vivi4g00263 682 Pfam Protein kinase domain 361 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00263 682 SUPERFAMILY Protein kinase-like (PK-like) 337 630 IPR011009 -
Vivi4g00263 682 Gene3D Transferase(Phosphotransferase) domain 1 435 647 - -
Vivi4g00263 682 FunFam Wall-associated receptor kinase-like 20 435 643 - -
Vivi4g00263 682 ProSiteProfiles Protein kinase domain profile. 358 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00263 682 Pfam Wall-associated receptor kinase galacturonan-binding 47 112 IPR025287 GO:0030247
Vivi4g00263 682 MobiDBLite consensus disorder prediction 658 682 - -
Vivi4g00263 682 SMART serkin_6 358 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00263 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vivi4g00263 682 MobiDBLite consensus disorder prediction 663 682 - -
Vivi4g00263 682 CDD STKc_IRAK 364 633 - -
Vivi4g00263 682 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00263 Vivi-Chr4 6058087 6063247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00263 47 682 Receptor kinase-like Gene Family AT1G25390 42.879 1.04e-147 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00263 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00263 - - mtr:25496819 688.723