Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00262 ATGTCAAAACCCTCTCAAACCTTGTTTGCATCATCCATCATTCTCATCATAACATCATGTTATGCTGATAACTCCAACACAACATCATCACCATCATCATCACTATGTCCTATTGCTCTATGTGGCAATATTTCCATTCACTACCCTTTTTGGATTAAGTCTCAAACAATCAACACTCTAGATCAATTTTGTGGCTATCCTGATTTTGGCCTTGAATGCTCAAAAAACAACAAAACCATAATCAATCTTCCAAGTGACACATATTATGTTACCGACATAAACTATGATAATAGTTCAATAGCCCTAGTTGACATAGATATATTGGATCAAAAATGTCCTAGGGTAAGAAAAAATGTTACACTTTCTAACCTTCCTTTGTCTTTTAGCAAACTAGATTTGAATCTTAGTTTCTACTTCAATTGTAGCTCTTACCCTTCAAATTTAGACCCTATAGGGTGCTTTAAGGTTAGTGATAATGAAAAGTTGAAGTCTTTTGTTTTTGTGGATGGTGATGAAGTTGGAATTGGTTATGGTAATTGGACATGTGAGGATCATGTTGTGGTGAGTGTTAAGGTTGATGAGGTGAGTGATTTTGTTGGTAGTGTTGGTGGTTTGATTAATGGGTTTGGTGCAGCTGTGAAGAAAGGGTTTGTGCTTGATTGGAGAAAAGGGTTTAAGGATTGTGTTGAGTGTGAGAACTCTGGTGGATATTGTGGATATGATGAAAAGACTAAGAACTCTACATGCATATGTGGAAATGGTAGTGTTGTTGCTAAAAGTTGCAAAAAAGGTAAACAGAAATTGACGAGGAATCTCGTCATTGGTGTTGGCTCTGCTGTTTTAGTCGCATTTGCAGCGTTCATAGCCATATATTTCTATAAGCGCCGGAAGAATAAGAATAAAACTTACGCAAAGTCATATGTACAATCTCGCAGCCTCTCTTCCGAGCTCACTTCAAAGGATCTTGAAAGTGGAAGTCAATTCTTTGAAAGAAGCCAAAACTTTGGAGTGCAGCATTTTACTTATAGTGAACTTGAAGAAGCCACAAACTTCTTTGATCCGTCCAAAGAACTCGGAGAAGGAGGCTTTGGAACGGTGTATTATGGAAAACTGTATGATGGGCGTAGTGTTGCGGTGAAGAGGTTATTTGAGAACAATTACAAAAGAGTTGAGCAATTCAAGAATGAAGTTGAAATCTTGGCATCATTAGTCCATCCAAATCTCGTGTCTCTATATGGATGCACTTCACGTCACAGTCGCGAGCTTCTACTTGTCTACGAGTATGTTTCTAATGGAACCGTCGCTGATCATCTCCGTGGTAAAGAAGCGAAACATGGAAAACTTACTTGGCCTATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCGGAAATCATTCACCGAGATATAAAAACAAATAATATTCTTCTCGACGCTCATTTTCATGTCAAGGTAGCGGATTTTGGACTCTCGCGCCTTTTTCCATACGATCAAACTCATGTTTCAACGGCTCCACAAGGGACACCGGGCTATGTGGATCCTGAATACCATCAGTGCTATCAACTTACGGATAAAAGTGATGTCTATAGCTTTGGAGTTGTGATGATTGAGTTGATATCGTCTTTGCCTGCCGTTGATATAACAAGACATAGGCATGAAATCAATTTGGCTAGCATGGCTCTCAACAGAATTCAAAACCAAGCATTGCATGAAATTGTGGATCCTACGCTCGGTTTTGAATCGGATTCTAAGGTAAAGAAAATGATCGTTGCCATGGGCGAGTTAGCGTTTCAATGTCTGCAAAGTTCGAAAGATATGAGACCTACCATGGACGAAGTGTTGGATAGTTTAAAGGATATTCAAAGTGATGGTAAGCATAAAAGCAAACCCGAGGTAATGGACATTTCAAATTTATCTGATGACGCTGTGCTGCTGAATAATGTTCCACCTCCACTATCGCCTGATTCAAATGTTAGGAGCAATTATACAACGCCGAATACTAGTGGATAA 2031 0.3895 MSKPSQTLFASSIILIITSCYADNSNTTSSPSSSLCPIALCGNISIHYPFWIKSQTINTLDQFCGYPDFGLECSKNNKTIINLPSDTYYVTDINYDNSSIALVDIDILDQKCPRVRKNVTLSNLPLSFSKLDLNLSFYFNCSSYPSNLDPIGCFKVSDNEKLKSFVFVDGDEVGIGYGNWTCEDHVVVSVKVDEVSDFVGSVGGLINGFGAAVKKGFVLDWRKGFKDCVECENSGGYCGYDEKTKNSTCICGNGSVVAKSCKKGKQKLTRNLVIGVGSAVLVAFAAFIAIYFYKRRKNKNKTYAKSYVQSRSLSSELTSKDLESGSQFFERSQNFGVQHFTYSELEEATNFFDPSKELGEGGFGTVYYGKLYDGRSVAVKRLFENNYKRVEQFKNEVEILASLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLRGKEAKHGKLTWPIRMNIAVETASALKYLHISEIIHRDIKTNNILLDAHFHVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVMIELISSLPAVDITRHRHEINLASMALNRIQNQALHEIVDPTLGFESDSKVKKMIVAMGELAFQCLQSSKDMRPTMDEVLDSLKDIQSDGKHKSKPEVMDISNLSDDAVLLNNVPPPLSPDSNVRSNYTTPNTSG 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00262 676 Pfam Protein kinase domain 355 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00262 676 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Vivi4g00262 676 MobiDBLite consensus disorder prediction 657 676 - -
Vivi4g00262 676 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 673 IPR044652 GO:0004672
Vivi4g00262 676 MobiDBLite consensus disorder prediction 652 676 - -
Vivi4g00262 676 SMART serkin_6 352 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00262 676 Gene3D Phosphorylase Kinase; domain 1 325 428 - -
Vivi4g00262 676 Pfam Wall-associated receptor kinase C-terminal 174 253 IPR032872 -
Vivi4g00262 676 CDD STKc_IRAK 358 627 - -
Vivi4g00262 676 FunFam Wall-associated receptor kinase-like 20 429 637 - -
Vivi4g00262 676 ProSiteProfiles Protein kinase domain profile. 352 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00262 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vivi4g00262 676 SUPERFAMILY Protein kinase-like (PK-like) 331 624 IPR011009 -
Vivi4g00262 676 Pfam Wall-associated receptor kinase galacturonan-binding 36 104 IPR025287 GO:0030247
Vivi4g00262 676 Gene3D Transferase(Phosphotransferase) domain 1 429 641 - -
Vivi4g00262 676 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00262 Vivi-Chr4 6058082 6069161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00262 227 676 Receptor kinase-like Gene Family AT1G25390 51.380 7.63e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00262 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00262 - - qlo:115964068 683.715