Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00249 ATGTATCTGAAAAGTATGGAAGAACTTCAACAAGACCAAGAGTTGCTAAGATCAGAGGTCAACCAATTGAAAAGCCAGATGAATCAGATTATGGAAACCCTGCAAGTCTTGTTGAAGAGAGAATGCAACTTTCCTCCGATTATTACAAAGCAAGTGGATACTCATTTAGCCTTCTCCGTTGCTACTTCAAATCAAGGGCAACCATCTGTTATGTCATGTGATTCATATTTTGGAGTAGAGAAGGAAACACCTGTTTGCTTTCCTCAATCAGTGCTTCGTAGGACTCTGCATCAACGTCCATTGTCTTGTTTAGGAAAACTTAATGATGGGCGTAGTGTTGCGGTGAAGAAGTTACTTGAGAAAAACAATTACAAAAGAGTTGAGCAATTCAAGAATGAAGTTGAAATCATGGCATCATTAGTCCATGAAAATCTTGTGTCTCTATATGGATGCACTTCACTTCACAGTCCCGAGCTTCTACTTGTCTATGAGTATGTTTCTAATGGAACCGTTGCTGATCCTCTCCGTGGTAAAGAAGCAAAACATGGAAAACTTACTTGGCCTATTAGAATGAATATTGCTGTGGAGACAGCAAAGGCGTTGGAGTATATTCATACATCTAAAATCATTCACAGAGATATTAAAACAAATAATATTCTCCTTGACACTCATTTTCGTGTGAAGGTAGCCGATTTTGGACTCTCGCGCCTTTTTCAAGTCGATAAAACTCATGTTTCAACGGCTCCACGAGGGACTCTGGGTTATTTGGATCCTGAATACCAGCAATGCTCTCAACTTACCGTTAAAAGTGATGTGTATAGCTTTGGTGTTGTGATGATTGAGTTGATATCGTCTTTGCGTGCCGTTGATAATATAACAAGTGATGGGCATGAATTTGATTTGGCTTGCATGGCTCTAACCAAAATTCAAAACCAAGCATTGCATGAAATTGTGGATCCTACACTCGGTTTTGAATCGGATTCTAAAGTAAAGAACATGATCATTGCCATGGGCGACTTAGCATCTCAATGTTTGCAAAGTTCGAAAAATTCGAGACCTACCATGGATGAAGTGTTGGAAAGTTTAGAGGAGATTCAAAAAGATGGTAAGCTTAAAAGCCAACCCGAGGTAATGGGCATTTCGAATTTATCTGATGAGGCTTCCACCTCCACTATCACCTGA 1182 0.3959 MYLKSMEELQQDQELLRSEVNQLKSQMNQIMETLQVLLKRECNFPPIITKQVDTHLAFSVATSNQGQPSVMSCDSYFGVEKETPVCFPQSVLRRTLHQRPLSCLGKLNDGRSVAVKKLLEKNNYKRVEQFKNEVEIMASLVHENLVSLYGCTSLHSPELLLVYEYVSNGTVADPLRGKEAKHGKLTWPIRMNIAVETAKALEYIHTSKIIHRDIKTNNILLDTHFRVKVADFGLSRLFQVDKTHVSTAPRGTLGYLDPEYQQCSQLTVKSDVYSFGVVMIELISSLRAVDNITSDGHEFDLACMALTKIQNQALHEIVDPTLGFESDSKVKNMIIAMGDLASQCLQSSKNSRPTMDEVLESLEEIQKDGKLKSQPEVMGISNLSDEASTSTIT 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00249 393 MobiDBLite consensus disorder prediction 367 393 - -
Vivi4g00249 393 SMART serkin_6 98 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00249 393 ProSiteProfiles Protein kinase domain profile. 90 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00249 393 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 105 373 IPR044652 GO:0004672
Vivi4g00249 393 SUPERFAMILY Protein kinase-like (PK-like) 105 375 IPR011009 -
Vivi4g00249 393 MobiDBLite consensus disorder prediction 377 393 - -
Vivi4g00249 393 Pfam Protein tyrosine and serine/threonine kinase 108 362 IPR001245 GO:0004672|GO:0006468
Vivi4g00249 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vivi4g00249 393 Gene3D Transferase(Phosphotransferase) domain 1 167 378 - -
Vivi4g00249 393 Gene3D Phosphorylase Kinase; domain 1 102 166 - -
Vivi4g00249 393 FunFam Wall-associated receptor kinase-like 20 166 375 - -
Vivi4g00249 393 Coils Coil 6 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00249 Vivi-Chr4 5437553 5438887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00249 105 368 Receptor kinase-like Gene Family AT1G25390 58.868 2.42e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00249 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00249 - - vvo:131595270 774.237