Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00246 ATGTACAATCTCGCAGCCTCTCTTCTGAGCTCACTTCAAAGGATCTTGAAAGTGGAAGTCAACACTTATCATTTTAGTTATAGTGAACTTGAAGAAGCCACAAACAACTTTGATCCATCCAAAGTGCTGGGAAAAGGAGCCTTTGGGACGGTGTATTACGGAAAACTTAATGATGGGCGTAGTGTTGCGGTGAAGAAGTTACTTGAGAAAAACAATTACAAAAGAGTTGAGCAATTCAAGAATGAAGTTGAAATCATGGCATCATTAGTCCATGAAAATCTTGTGTCTCTATATGGATGCACTTCACTTCACAGTCCCGAGCTTCTACTTGTCTATGAGTATGTTTCTAATGGAACCGTTGCTGATCCTCTCCGTGGTAAAGAAGCAAAACATGGAAAACTTACTTGGCCTATTAGAATGAATATTGCTGTGGAGACAGCAAAGGCGTTGGAGTATATTCATACATCTAAAATCATTCACAGAGATATTAAAACAAATAATATTCTCCTTGACACTCATTTTCGTGTGAAGGTAGCCGATTTTGGACTCTCGCGCCTTTTTCAAGTCGATAAAACTCATGTTTCAACGGCTCCACGAGGGACTCTGGGTTATTTGGATCCTGAATACCAGCAATGCTCTCAACTTACCGTTAAAAGTGATGTGTATAGCTTTGGTGTTGTGATGATTGAGTTGATATCGTCTTTGCGTGCCGTTGATAATATAACAAGTGATGGGCATGAATTTGATTTGGCTTGCATGGCTCTAACCAAAATTCAAAACCAAGCATTGCATGAAATTGTGGATCCTACACTCGGTTTTGAATCGGATTCTAAAGTAAAGAACATGATCATTGCCATGGGCGACTTAGCATCTCAATGTTTGCAAAGTTCGAAAAATTCGAGACCTACCATGAATAAAGTGTTGGAAAGTTTAGAGGAGATTCAAAAAGATGGTAAGCTTAAAAGCCAACCCGAGGTAATGGGCATTTCGAATTTATCTGATGAGGCTTCCACCTCCACTATCACCTGA 1029 0.3965 MYNLAASLLSSLQRILKVEVNTYHFSYSELEEATNNFDPSKVLGKGAFGTVYYGKLNDGRSVAVKKLLEKNNYKRVEQFKNEVEIMASLVHENLVSLYGCTSLHSPELLLVYEYVSNGTVADPLRGKEAKHGKLTWPIRMNIAVETAKALEYIHTSKIIHRDIKTNNILLDTHFRVKVADFGLSRLFQVDKTHVSTAPRGTLGYLDPEYQQCSQLTVKSDVYSFGVVMIELISSLRAVDNITSDGHEFDLACMALTKIQNQALHEIVDPTLGFESDSKVKNMIIAMGDLASQCLQSSKNSRPTMNKVLESLEEIQKDGKLKSQPEVMGISNLSDEASTSTIT 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00246 342 MobiDBLite consensus disorder prediction 316 342 - -
Vivi4g00246 342 Pfam Protein tyrosine and serine/threonine kinase 40 311 IPR001245 GO:0004672|GO:0006468
Vivi4g00246 342 FunFam Wall-associated receptor kinase-like 20 115 324 - -
Vivi4g00246 342 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Vivi4g00246 342 ProSiteProfiles Protein kinase domain profile. 37 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00246 342 Gene3D Phosphorylase Kinase; domain 1 11 114 - -
Vivi4g00246 342 Gene3D Transferase(Phosphotransferase) domain 1 115 327 - -
Vivi4g00246 342 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 322 IPR044652 GO:0004672
Vivi4g00246 342 MobiDBLite consensus disorder prediction 326 342 - -
Vivi4g00246 342 SMART serkin_6 37 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00246 342 PIRSF ILK 16 327 - -
Vivi4g00246 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Vivi4g00246 342 SUPERFAMILY Protein kinase-like (PK-like) 15 317 IPR011009 -
Vivi4g00246 342 FunFam Somatic embryogenesis receptor kinase 1 11 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00246 Vivi-Chr4 5378365 5382406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00246 25 317 Receptor kinase-like Gene Family AT1G25390 59.184 1.82e-117 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00246 PK_Tyr_Ser-Thr 1.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00246 - - vvo:131594361 671.774