Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00236 ATGGAAAAATACCATTATCAAATATCATTACCATTTTCTTTCATCACTAGCAATTTTATATTTCTCTCACTTTTCTTTAGCCAATTTCACGTTACCGCAGATGAGATGTACACATCTTGTGCACCTTTTAACTGTGGTAATTTCATTAATATAAGCTATCCTTTTTGGAACTTTAACACCCAACCTAGCTATTGTGGACACCCAAAATTTATGCTTGACTGTCAAAATGGAAGCTTGACTATAGAAATTAAGTCACAAAAGTTTCACATCCTTCATATGGATCAAGCCTCTCAAATTTTGAGGATTGCAAGAGAAGATATGTGGAATTTGGTTGCCGGTGAAAGACGTCTTTGTCCCAAACATTATACTAATGTGGATATAGATTTTCATTTGTTCAATTACACCTCCAACAATGAAATCTATACTATATTGTACGAGTGTGGTCCTCTTCCAGATTCATACTATTCTCTCGCAAATCAAAATATTTTTGAAGTAACGACTTGTTTTATAGAGGGGATTCTTCATACTGAATACATAGTATCAAGTGACAAATTGGCTGATTTTGGTGTTATGAAGTGTAAGAATAGTACCACAGTTCGTGGAAAAAGGAATTATTTGAAAAACAACTCAACAGTTACAAGGAATGTTTTAGAGGAAGGATTTGAAGTGAGATGGAATGTTGTGGGAGATGACACGTGCCATAATTGCATAAAGCGTGGAGGGAGATGTATATACAAAAGAGTAGAAAAGGCAGTATTGTGTCTCTCAAAGGAATCTATAATATCAAAAGGAACATGGAGTTGGAAAACGAAACTCACTGTTGGTGTTATTTCTTCTATGTTGGCAACACTTGTTATCGCTTCCATATGCATTTATAGGCGCCGCAATAATAATAGTTCTGCTGAGTCCTATATAGACTCTCCTAGCATCTCCCAACAACTAACTGAACGGATTAGCAAAAGTCAAAACTATGGAGTTGAACATTTTATCTTTGATGATCTTAATGTGGCCACGGAACACTTTAGTGTTGACAACAGACTAGGAGATGGAGGCAGTGGAGAAGTATTTCGTGGAAAACTACCTGACGGGCGCGAAGTGGCGGTGAAAAGACTTTTTGACACCGGAAATAAACAAGACCTATTTCTCAATGAAATAAAAATTCTAGCAAAGGTTAAGCATGACAATCTTGTATTGTTGTATGGTTGCACATCACTAAAAAGCCGCGAACCTATGGTTGTCTACGAGTATGTTTCCAATGGAACTTTGCATGAACTTCTTCATGGCGACCAAACTACATCTAAAAAACTTCCTTGGGATACTAGGATGAGGATTGCTGTGGAGACTGCAGATGCATTGAAGTATCTTCACACTTATAAAGTCGTCCATAGAGATGTTAAAACTAGTAACATTCTGTTAACTGCCGATTGTCATGTCAAAGTAGCAGATTTTGGACTCTCGCGCATTTTTCTAGTTGATGAAAGTCGTGTTTTAACAACTGCACAAGGGACTCCAGGCTGTGTAGACCCCGAGTACCAAAATACTAATGTGCTTACTTATAAAAGTGATGTTTTTAGTTTTGGAGTGGTGTTGATGGAACTAATAACATGTTTGTGTGCTTATGATGATATCTCCAGAAAGGGCGATGATATCTTTCTGTACAAAATGGCTGTGGACAGAATTCAAAATCATGCTTTGACTGATATTGTGGACAGTACTCTCAATTTTAATTCAGATTCCAAAGAAAATCAAATGATCAATGGTGTTGCCGATTTAGCAGTTTCATGTCTCCAAATTTCCAGTGATAGACCAACCATGGCAAAAGTGTTCGAATCCTTGCTGAAAATTCAACGCGTGAATGAACTCCATCCTGAAGCTGCTAGTAGTTCTAACCCAGGTGATGAAATAAAGTTACTTAATATATAA 1923 0.3692 MEKYHYQISLPFSFITSNFIFLSLFFSQFHVTADEMYTSCAPFNCGNFINISYPFWNFNTQPSYCGHPKFMLDCQNGSLTIEIKSQKFHILHMDQASQILRIAREDMWNLVAGERRLCPKHYTNVDIDFHLFNYTSNNEIYTILYECGPLPDSYYSLANQNIFEVTTCFIEGILHTEYIVSSDKLADFGVMKCKNSTTVRGKRNYLKNNSTVTRNVLEEGFEVRWNVVGDDTCHNCIKRGGRCIYKRVEKAVLCLSKESIISKGTWSWKTKLTVGVISSMLATLVIASICIYRRRNNNSSAESYIDSPSISQQLTERISKSQNYGVEHFIFDDLNVATEHFSVDNRLGDGGSGEVFRGKLPDGREVAVKRLFDTGNKQDLFLNEIKILAKVKHDNLVLLYGCTSLKSREPMVVYEYVSNGTLHELLHGDQTTSKKLPWDTRMRIAVETADALKYLHTYKVVHRDVKTSNILLTADCHVKVADFGLSRIFLVDESRVLTTAQGTPGCVDPEYQNTNVLTYKSDVFSFGVVLMELITCLCAYDDISRKGDDIFLYKMAVDRIQNHALTDIVDSTLNFNSDSKENQMINGVADLAVSCLQISSDRPTMAKVFESLLKIQRVNELHPEAASSSNPGDEIKLLNI 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00236 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 619 IPR044652 GO:0004672
Vivi4g00236 640 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Vivi4g00236 640 SUPERFAMILY Protein kinase-like (PK-like) 319 612 IPR011009 -
Vivi4g00236 640 Gene3D Transferase(Phosphotransferase) domain 1 417 626 - -
Vivi4g00236 640 Pfam Wall-associated receptor kinase galacturonan-binding 40 104 IPR025287 GO:0030247
Vivi4g00236 640 Gene3D Phosphorylase Kinase; domain 1 303 416 - -
Vivi4g00236 640 Pfam Wall-associated receptor kinase C-terminal 190 257 IPR032872 -
Vivi4g00236 640 Pfam Protein tyrosine and serine/threonine kinase 343 608 IPR001245 GO:0004672|GO:0006468
Vivi4g00236 640 SMART serkin_6 341 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00236 640 ProSiteProfiles Protein kinase domain profile. 341 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00236 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00236 Vivi-Chr4 4998145 5004589 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00236 38 623 Receptor kinase-like Gene Family AT1G25390 33.670 3.51e-86 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00236 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00236 - - psat:127115365 926.006