Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00229 ATGTACATTAAGAAAGTTCTATTGATTGTTGAAAAGGTGCAAGCACCTAAAGTCAAGCTGGGAGAAAAGATCACAGCTCTTCAACAAATTGTGTCTCCTTTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAGAGTATCTTGAAGAACAAGTCCAGTTACTGAGTAACCCTTACTTGAAGGCAAATTCACACAAGGATCCAAGGGGAATGTACTTTGATAGAAAAGACAAGGACGATGCGAAAATGGATCTTCGAAGCAGAGGTCTTTGTTTAGTTCCAACTTCATGTACAGCTTTAGTTTATAGAGAGAACACTGGACCAGATTACTGGACACCAGCATATAGAGGATGTTTGTATAGGTAA 381 0.3911 MYIKKVLLIVEKVQAPKVKLGEKITALQQIVSPFGKTDTASVLFEAIGYIEYLEEQVQLLSNPYLKANSHKDPRGMYFDRKDKDDAKMDLRSRGLCLVPTSCTALVYRENTGPDYWTPAYRGCLYR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00229 126 CDD bHLH_AtbHLH_like 19 61 IPR045239 -
Vivi4g00229 126 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 53 IPR011598 GO:0046983
Vivi4g00229 126 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 104 - -
Vivi4g00229 126 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 69 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00229 Vivi-Chr4 4296580 4297477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00229 14 126 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 49.138 2.57e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00229 - - vvo:131595026 259.225