Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00225 ATGGACAAATATTCTTCTCAAATATTGCTACCATTTTCTTTCATCATAACCACCTTTCTTTTCACTCAGGTCTTAAGTCAATTCCATGTTGTTGCGGATAAAATGTACAATTCTTGTGCTCCTTTCAATTGCGGTAATTTTTTAAATATATCATATCCTTTCTGGAATCTTAACACTCAACCCAACTATTGTGGCCGTCCGGAATTTACACTTGACTGCCAAAATGGCCTTTTGACTATGGAAATTCTGTCCCAGAAATTTCGCATTCTTGATATAAATCAATCCTCTCAAGTTTTGAGAATTGCAAGAGACGATTTATGGAGTTTTGTTCCTGGAAAAGAGTTTCCTTGTCCCAAACATTATATTAATGTGGAAATAGATTCTCATTTCTTTCATTACACTTCCAACAATGAAATGTATACTATATTGTATGAGTGTGGCGATCTTCCAAATTCATACTTCACTCCCTCGTTTCAAATTCCTTTTGAAGTAATGGGTTGTTATATTGAGGGAAAATTTCAGAGTACATACGTAGTTTCAAGTTCTAAATTGACTGATTTTAATGCGGTGAACTGCAAGAATAATATCACAGTACCTGGAAAAAAGAACTCTTTGCCAAACAAATCACGCATTACGAAGGGTATTTTAATCCAAGGATTTGAGGTGAGATGGAATGGTGTTGGGGAAGACAGGTGCCGTGCTTGTACAAAATATGGAGGGAGATGTGGATACAAAAGAGTAGAAAATTCATTTTTGTGTCTCTCGAAGAGATCTTCCGCCTCAAAAGGAACATGGAATTTGAAAAAGAAAATCATCACTGGTGTTATTTCAACTGTGTTGGCAACACTCGCTGTCATCACATCCATATACTTTTATAAGCGTTATAATATACACTCTCGCAACCTCTCCTTACAACCTTTTAGACTTGATAGTCAACGCATTAGTAAAAGTCAAAACTTTGGGGTCGAGCACTTCATCTTTAAAGATCTTTACAAGGCGACAAACCACTTCGACAAAAAACTAGGAAATGGAGGCAGTGCAGAAGTGTTTTATGGAAAACTACCAGATGGGCGTGAAGTGGCAGTGAAAAGGCTTTTTAACGGCGTCAATAATGAACAACATTTTCTTAACGAGATAAATATACTAGCAGGAGCTCGTCATTCTAATCTCATCTTGTTACATGGTTGCACATCACCCGATAGTCGTCGAGCTTTGATTGTCTACGAGTATGTTCCTAATGGATCTTTGAGTGATCATCTTCATGGTGACAAAGCAACACCGAATAAACTTCCTTGGGACATTAGGATGAGGATTGCCATGGAGACAGCAGATGCATTGAGCTATCTTCATCTTTCTCATATCATTCATAGGGATATTAAAACGAGTAATATTCTCTTAGATGCCGAATACCATGTTAAAGTAGCTGATTTTGGACTTTCGCGCCTTTTTCCTAATAATCAAAGTCGTGTTTTAACAATTCCAAAAGGGACATTAGGCTATGTAGATCCCGAGTACAGTCAAACTAATGCACTTACTTACAAAAGTGATGTGTTCAGCTTTGGAGTGGTGTTGATTGAACTCATAACATCTTTGCGTGCTTATGATCGCAACAGAAAGGATGATGGTGTCAATCTGTACGACATGGCTATTAAACGAAGTCAAGATCAAACTTTGCATGATATTGTGGATCATACCCTCGGTTTTGATACAGATTCCATGATAACCCAAATGATTAATGGGGTTGCCGAGTTAGCATTTCGCTGTCTCCAAAGTTCCAGTGATATGAGACCAACAATGGAAGATGTGCTCAAGGAATTGAAAGAAATCCAACCTCAAGTAGCCGGCAGTTCTACGCCAAATGATGAAATAGTGTTGCTGAATAATGATCTAGCTTGA 1896 0.3776 MDKYSSQILLPFSFIITTFLFTQVLSQFHVVADKMYNSCAPFNCGNFLNISYPFWNLNTQPNYCGRPEFTLDCQNGLLTMEILSQKFRILDINQSSQVLRIARDDLWSFVPGKEFPCPKHYINVEIDSHFFHYTSNNEMYTILYECGDLPNSYFTPSFQIPFEVMGCYIEGKFQSTYVVSSSKLTDFNAVNCKNNITVPGKKNSLPNKSRITKGILIQGFEVRWNGVGEDRCRACTKYGGRCGYKRVENSFLCLSKRSSASKGTWNLKKKIITGVISTVLATLAVITSIYFYKRYNIHSRNLSLQPFRLDSQRISKSQNFGVEHFIFKDLYKATNHFDKKLGNGGSAEVFYGKLPDGREVAVKRLFNGVNNEQHFLNEINILAGARHSNLILLHGCTSPDSRRALIVYEYVPNGSLSDHLHGDKATPNKLPWDIRMRIAMETADALSYLHLSHIIHRDIKTSNILLDAEYHVKVADFGLSRLFPNNQSRVLTIPKGTLGYVDPEYSQTNALTYKSDVFSFGVVLIELITSLRAYDRNRKDDGVNLYDMAIKRSQDQTLHDIVDHTLGFDTDSMITQMINGVAELAFRCLQSSSDMRPTMEDVLKELKEIQPQVAGSSTPNDEIVLLNNDLA 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00225 631 Gene3D Phosphorylase Kinase; domain 1 308 410 - -
Vivi4g00225 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Vivi4g00225 631 Pfam Protein kinase domain 337 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00225 631 Pfam Wall-associated receptor kinase C-terminal 179 255 IPR032872 -
Vivi4g00225 631 SUPERFAMILY Protein kinase-like (PK-like) 319 612 IPR011009 -
Vivi4g00225 631 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Vivi4g00225 631 SMART serkin_6 335 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00225 631 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 616 IPR044652 GO:0004672
Vivi4g00225 631 Pfam Wall-associated receptor kinase galacturonan-binding 39 103 IPR025287 GO:0030247
Vivi4g00225 631 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 411 619 - -
Vivi4g00225 631 Gene3D Transferase(Phosphotransferase) domain 1 411 617 - -
Vivi4g00225 631 ProSiteProfiles Protein kinase domain profile. 335 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00225 Vivi-Chr4 4211101 4215879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00225 232 610 Receptor kinase-like Gene Family AT1G25390 45.619 1.49e-97 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00225 Pkinase 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00225 - - psat:127115365 832.402