Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00224 ATGTACAATTCTTGTGCTCCTTTCAATTGCGGTAATTTTTTAAATATATCATATCCTTTCTGGAATCTTAACACTCAACCCAACTATTGTGGCCGTCCGGAATTTACACTTGACTGCCAAAATGGCCTTTTGACTATGGAAATTCTGTCCCAGAAATTTCGCATTCTTGATATAAATCAATCCTCTCAAGTTTTGAGAATTGCAAGAGACGATTTATGGAGTTTTGTTCCTGGAAAAGAGTTTCCTTGTCCCAAACATTATATTAATGTGGAAATAGATTCTCATTTCTTTCATTACACTTCCAACAATGAAATGTATACTATATTGTATGAGTGTGGCGATCTTCCAAATTCATACTTCACTCCCTCGTTTCAAATTCCTTTTGAAGTAATGGGTTGTTATATTGAGGGAAAATTTCAGAGTACATACGTAGTTTCAAGTTCTAAATTGACTGATTTTAATGCGGTGAACTGCAAGAATAATATCACAGTACCTGGAAAAAAGAACTCTTTGCCAAACAAATCACGCATTACGAAGGGTATTTTAATCCAAGGATTTGAGGTGAGATGGAATGGTGTTGGGGAAGACAGGTGCCGTGCTTGTACAAAATATGGAGGGAGATGTGGATACAAAAGAGTAGAAAATTCATTTTTGTGTCTCTCGAAGAGATCTTCCGCCTCAAAAGGAACATGGAATTTGAAAAAGAAAATCATCACTGGTGTTATTTCAACTGTGTTGGCAACACTCGCTGTCATCACATCCATATACTTTTATAAGCGTTATAATATACACTCTCGCAACCTCTCCTTACAACCTTTTAGACTTGATAGTCAACGCATTAGTAAAAGTCAAAACTTTGGGGTCGAGCACTTCATCTTTAAAGATCTTTACAAGGCGACAAACCACTTCGACAAAAAACTAGGAAATGGAGGCAGTGCAGAAGTGTTTTATGGAAAACTACCAGATGGGCGTGAAGTGGCAGTGAAAAGGCTTTTTAACGGCGTCAATAATGAACAACATTTTCTTAACGAGATAAATATACTAGCAGGAGCTCGTCATTCTAATCTCATCTTGTTACATGGTTGCACATCACCCGATAGTCGTCGAGCTTTGATTGTCTACGAGTATGTTCCTAATGGATCTTTGAGTGATCATCTTCATGGTGACAAAGCAACACCGAATAAACTTCCTTGGGACATTAGGATGAGGATTGCCATGGAGACAGCAGATGCATTGAGCTATCTTCATCTTTCTCATATCATTCATAGGGATATTAAAACGAGTAATATTCTCTTAGATGCCGAATACCATGTTAAAGTAGCTGATTTTGGACTTTCGCGCCTTTTTCCTAATAATCAAAGTCGTGTTTTAACAATTCCAAAAGGGACATTAGGCTATGTAGATCCCGAGTACAGTCAAACTAATGCACTTACTTACAAAAGTGATGTGTTCAGCTTTGGAGTGGTGTTGATTGAACTCATAACATCTTTGCGTGCTTATGATCGCAACAGAAAGGATGATGGTGTCAATCTGTACGACATGGCTATTAAACGAAGTCAAGATCAAACTTTGCATGATATTGTGGATCATACCCTCGGTTTTGATACAGATTCCATGATAACCCAAATGATTAATGGGGTTGCCGAGTTAGCATTTCGCTGTCTCCAAAGTTCCAGTGATATGAGACCAACAATGGAAGATGTGCTCAAGGAATTGAAAGAAATCCAACCTCAAGTAGCCGGCAGTTCTACGCCAAATGATGAAATAGTGTTGCTGAATAATGATCTAGCTTGA 1794 0.3802 MYNSCAPFNCGNFLNISYPFWNLNTQPNYCGRPEFTLDCQNGLLTMEILSQKFRILDINQSSQVLRIARDDLWSFVPGKEFPCPKHYINVEIDSHFFHYTSNNEMYTILYECGDLPNSYFTPSFQIPFEVMGCYIEGKFQSTYVVSSSKLTDFNAVNCKNNITVPGKKNSLPNKSRITKGILIQGFEVRWNGVGEDRCRACTKYGGRCGYKRVENSFLCLSKRSSASKGTWNLKKKIITGVISTVLATLAVITSIYFYKRYNIHSRNLSLQPFRLDSQRISKSQNFGVEHFIFKDLYKATNHFDKKLGNGGSAEVFYGKLPDGREVAVKRLFNGVNNEQHFLNEINILAGARHSNLILLHGCTSPDSRRALIVYEYVPNGSLSDHLHGDKATPNKLPWDIRMRIAMETADALSYLHLSHIIHRDIKTSNILLDAEYHVKVADFGLSRLFPNNQSRVLTIPKGTLGYVDPEYSQTNALTYKSDVFSFGVVLIELITSLRAYDRNRKDDGVNLYDMAIKRSQDQTLHDIVDHTLGFDTDSMITQMINGVAELAFRCLQSSSDMRPTMEDVLKELKEIQPQVAGSSTPNDEIVLLNNDLA 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00224 597 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Vivi4g00224 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Vivi4g00224 597 Gene3D Transferase(Phosphotransferase) domain 1 377 583 - -
Vivi4g00224 597 Gene3D Phosphorylase Kinase; domain 1 274 376 - -
Vivi4g00224 597 ProSiteProfiles Protein kinase domain profile. 301 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00224 597 Pfam Wall-associated receptor kinase galacturonan-binding 5 69 IPR025287 GO:0030247
Vivi4g00224 597 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 377 585 - -
Vivi4g00224 597 Pfam Protein kinase domain 303 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00224 597 SMART serkin_6 301 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00224 597 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 582 IPR044652 GO:0004672
Vivi4g00224 597 SUPERFAMILY Protein kinase-like (PK-like) 285 578 IPR011009 -
Vivi4g00224 597 Pfam Wall-associated receptor kinase C-terminal 145 221 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00224 Vivi-Chr4 4211101 4215879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00224 198 576 Receptor kinase-like Gene Family AT1G25390 45.619 3.93e-98 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g00224 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00224 - - psat:127115365 798.89