Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00220 ATGGCGACTCCGTTAACGGGATTGCAACAGCACTTAGACGGCGGCGGAGTGGCCGTGCTGTCGAATCTCGTTTCCTCTTCTTCCACCTCCAATGGCGGCGGCGTATTCAACCGCTCCTCTATATCCGAATCGCCAATTTTGATTTTCTCGTTTTTCCAAAAAGCGATTGGGAACGAGCTCGATGCGTTGCACCGATTAGCTTTGGCGTTCGCTACCGGAAACTGCTCCGATATTCAACCTCTCTCCAAACGCTACCATTTCCTTAGATCGATGTATAGACACCATTCCAATGCTGAAGACGAGGTGATTTTTCCAGCTTTGGATAAGCGCGTGAAGAATGTAGCACAGACATATTCTCTTGAACATAAGGGTGAAAGTGATCTTTTTGACCATTTGTTTGAGTTGTTAAACTCTTCTGTTGATAATGATGAAAGTTTTCGAAGGGAGCTAGCATCCTGCACAGGAGCTCTGCAGACGTCTCTTAGTCAACACATGGCTAAGGAGCAACAACAAGTGTTTCCACTGCTTATTGAGAAGTTCTCAGTGGAGGAACAAGCATCTTTAGTTTGGCAGTTTCTTTGTAGTATTCCAGTGAATATGATGGCAAAATTTCTTCCATGGCTTTCAGCATCCATATCACCTGATGAATCTCAGGATTTACGTAAGTGCTTAAGAAAGATAGTGCCAGAAGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGCGGAGTAGTGCTAACACAGTTGAAAACTGTGTAGATCATTCTCAGGTTCAATGTAGTGCTTGTCCTTTAGCCCATCAGACTGAGAAAATAAAATGTGCGTGCGAGTCCACTGTATCTGGGAAAAGAAAATATTCTGAATCTATTCTAGATATTCCGGAGACAATGGGTTCGCATCCTATAGATGAAATATTGCTCTGGCATAATGCTATAAAAAATGAGTTAAATGAGATAGCAGTGGAGACCAGAAAGATACAACACTCTGGAGATTATACTAATCTGTCTGCTTTTAATGAAAGGTTGCAATTCATTGCTGAAGTTTTCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCGGCTGTGGATGGAGACTTTTCTTTCTTTCAGGAGCATGTTGAAGAAGAAAGCCAATTTAATGACTTCCGATCTTTGATTGAAAGAATTCTAAGCGAAGAAGCAACATCTAGTTCAGAAGTTGAACTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGAAAGCACTTTAGCTTCAAAAGGCAGCGTGAACTAGTGTATGAAAGCTTGTGCATGATGCCTCTAAAATTGATTGAGCGTGTCCTACCATGGTTTGTTGGATCATTAACTGAAGATGAAGCTGAGATATTTTTGAAAAACATACAATTGGCAGCTCCAGCAATAGATTCTGCTTTAGTCACTCTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAAATGGCCAGTGCTTGTCTTCAAGTGCATCACGCTTCTGTCCTGCTAAAAAAATTGTCCGGTCTTCCTGTGCTTGTGCATTGTCTGGTAAAGATTGCTCATTATTAGCTGAATCAGATGGGACCCAAAGATCAGCGAAGAGAAGCATATCTGAGTTGCACAAAAATGGAGATGTTTCAAAAACACCAGAAAATGAATGTGCTCAGAAACAATGTTGTGGTACCCGGTCTTGTTGTGTACCAGCGTTAGGGGTCAGCAGTAACAATTTGGGGCTGAGTTCACTTTCTGCTGCCAAGTCCTTACGGAGCTTCACTTCTTCCGCCCCATCTCTTAATTCCAGTCTTTTCATATGGGAAACTGATAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAGGCTATACGCATAGATTTGGAGTATTTAGATATAGAATCTGGAAAGCTTTGTGACGGTGATGGAGCAACTATTAGGCAATTTACTGGAAGATTCCGTCTTTTATGGGGTTTATACAGAGCTCACAGTAATGCTGAAGACGATATAGTTTTTCCTGCATTGGAATCCAAAGAGACACTTCATAATGTGAGCCATTCTTACACACTGGATCATAAAGCAGAAGAAAAGTTATTTGAAGATATTTCTTGTGCTCTCTCTGAGCTTTCTGTCCTTCATGAAGCATTGCAGAGGACCCATATGTCAGAGGATTTAAGTGAAACTAATTTGGGATTGTCCGAAGTCAATGATAGTGATGATATCAGAAAGTTCAATGAGCTTGCAACTAAGCTTCAAGGGATGTGTAAATCTATACGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCTCGAACTCTGGCCGTTGTTTGGGAAGCATTTCACCGTGGAAGAACAAGACAAGATAGTGGGTCGAATAATTGGAACTACAGGGGCCGAAGTTCTCCAATCAATGTTACCGTGGGTGACTTCTGCACTTACACAAGATGAACAGAACCAAATGATGGATACATGGAAACAAGCAACTAAGAATACAATGTTCAATGAATGGCTAACTGAATGCTTGATAGAGAGTCCCGGATCTACATCACAGACAGAAACATCAGAACATAGCACTTCTCAAAGAGGGGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCTGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAAGTTTATCGTGATTCAACCCTTGACCCAAGGAGAAAGGCATATCTAGTGCAGAATCTGATGACAAGTCGTTGGATAGCTGCCCAACAGAAGTTACCTAAATCTCAATCTGGGGAATCGTCTAATAAACAAATAGAAGGGTGTGTACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGCTGTGAGCACTATAAGAGAAACTGCAAAGTTCGAGCTGCTTGTTGTGGGAAGTTATTTACATGCAGATTTTGTCATGACAACAATTCAAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGGCCTGCATGACTATACAGCCAGTTGGGCCCATATGCACAACGCCTTCTTGTAATGGACTTTCAATGGCAAAATACTACTGTAGCATTTGCAAATTTTTTGATGATGAAAGGAATGTTTACCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGGATTGATTACTTTCATTGTATGAAATGTAATTGTTGTGTGGGGATAAAATCAGTGTCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAACTGCCCAATTTGCTGCGACGACTTGTTCACATCAAGTGCAACGGTCAGAGCTCTTGCTTGTGGGCATTACATGCATTCTTCTTGCTTTCAGGCATACACTTGCAGTCACTACACATGTCCAATCTGCAGCAAGTCGTTGGGAGATATGGCGGTTTACTTTGGTATGCTTGACGCGTTATTGGCTGCTGAGCAGCTTCCTGAAGAGTACAGGGACCGGTCTCAGGACATACTCTGTCATGACTGTGATCGAAAGGGAGTCTCACACTTCCACTGGTTATATCATAAATGTGGGTTTTGTGGTTCATATAATACTCGGGTGATCAAGAGTGAGACAACAAATTCCAGCTGCCCTTAA 3699 0.4169 MATPLTGLQQHLDGGGVAVLSNLVSSSSTSNGGGVFNRSSISESPILIFSFFQKAIGNELDALHRLALAFATGNCSDIQPLSKRYHFLRSMYRHHSNAEDEVIFPALDKRVKNVAQTYSLEHKGESDLFDHLFELLNSSVDNDESFRRELASCTGALQTSLSQHMAKEQQQVFPLLIEKFSVEEQASLVWQFLCSIPVNMMAKFLPWLSASISPDESQDLRKCLRKIVPEEKLLQKVIFTWMEGRSSANTVENCVDHSQVQCSACPLAHQTEKIKCACESTVSGKRKYSESILDIPETMGSHPIDEILLWHNAIKNELNEIAVETRKIQHSGDYTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGDFSFFQEHVEEESQFNDFRSLIERILSEEATSSSEVELYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQRELVYESLCMMPLKLIERVLPWFVGSLTEDEAEIFLKNIQLAAPAIDSALVTLFSGWACKARKNGQCLSSSASRFCPAKKIVRSSCACALSGKDCSLLAESDGTQRSAKRSISELHKNGDVSKTPENECAQKQCCGTRSCCVPALGVSSNNLGLSSLSAAKSLRSFTSSAPSLNSSLFIWETDSSSCDVGSAERPIDTIFKFHKAIRIDLEYLDIESGKLCDGDGATIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKAEEKLFEDISCALSELSVLHEALQRTHMSEDLSETNLGLSEVNDSDDIRKFNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNQMMDTWKQATKNTMFNEWLTECLIESPGSTSQTETSEHSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSQSGESSNKQIEGCVPSFRDPEKQVFGCEHYKRNCKVRAACCGKLFTCRFCHDNNSSDHSMDRKATLEMMCMACMTIQPVGPICTTPSCNGLSMAKYYCSICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCVGIKSVSHKCLEKGLEMNCPICCDDLFTSSATVRALACGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEQLPEEYRDRSQDILCHDCDRKGVSHFHWLYHKCGFCGSYNTRVIKSETTNSSCP 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00220 1232 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 683 1228 - -
Vivi4g00220 1232 CDD Hr-like 305 434 - -
Vivi4g00220 1232 ProSiteProfiles Zinc finger CTCHY-type profile. 1052 1115 IPR017921 -
Vivi4g00220 1232 Pfam Hemerythrin HHE cation binding domain 640 803 IPR012312 -
Vivi4g00220 1232 Pfam Hemerythrin HHE cation binding domain 56 176 IPR012312 -
Vivi4g00220 1232 Pfam Hemerythrin HHE cation binding domain 302 436 IPR012312 -
Vivi4g00220 1232 SMART ring_2 1116 1157 IPR001841 -
Vivi4g00220 1232 SUPERFAMILY CHY zinc finger-like 979 1043 IPR037274 GO:0008270
Vivi4g00220 1232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1109 1160 IPR013083 -
Vivi4g00220 1232 ProSiteProfiles Zinc finger RING-type profile. 1116 1158 IPR001841 -
Vivi4g00220 1232 CDD Hr-like 642 802 - -
Vivi4g00220 1232 SUPERFAMILY Zinc hairpin stack 1053 1108 IPR037275 -
Vivi4g00220 1232 SUPERFAMILY RING/U-box 1113 1162 - -
Vivi4g00220 1232 Pfam CHY zinc finger 986 1062 IPR008913 GO:0008270
Vivi4g00220 1232 Gene3D nmb1532 protein domain like 44 194 - -
Vivi4g00220 1232 Gene3D nmb1532 protein domain like 305 453 - -
Vivi4g00220 1232 CDD Hr-like 48 174 - -
Vivi4g00220 1232 MobiDBLite consensus disorder prediction 873 893 - -
Vivi4g00220 1232 FunFam Zinc finger protein-related isoform 1 1111 1160 - -
Vivi4g00220 1232 CDD RING-H2_Pirh2-like 1115 1158 - -
Vivi4g00220 1232 Gene3D nmb1532 protein domain like 636 873 - -
Vivi4g00220 1232 Pfam Ring finger domain 1115 1157 IPR001841 -
Vivi4g00220 1232 Gene3D - 1187 1229 - -
Vivi4g00220 1232 ProSiteProfiles Zinc finger CHY-type profile. 979 1049 IPR008913 GO:0008270
Vivi4g00220 1232 Pfam Zinc-ribbon 1163 1220 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00220 Vivi-Chr4 3948777 3958009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00220 1 1231 C2H2 Transcription Factor Family AT3G18290 66.614 0.0 1675