Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00213 ATGTCCTTCTTCTCCAGCCTCTGCGCCTGCCTGCAGAGACGGCTGAAGAAGGGCGCCACAGCCTCCGACGACGAAGCCGATGACGATAAAGATACCATCGACGCCGGTGACTCTTCCGACCTCTTGTTCGACCTTCATACTCTTCAACTCGCCACCAATTTCTTCTCTGAGCTTAATCAACTTGGTCGTGGAGGCTTTGGTCCTGTTTTCAAGGGATTGATGCCAAATGGTGAAGAAGTGGCTATTAAAAAGCTGTCATTGGAATCTAGACAAGGAATTAGAGAATTTACAAACGAAGTTCGGCTATTACTAAGAATCCAGCACAAGAATTTAGTCACTTTACTAGGTTGTTGTGCAGAAGGACCCGAAAAAATGCTTGTCTATGAGTATCTACCAAACAAAAGTCTTGATCACTTTTTGTTCGATAAAAAGAGGTCATTGGATTGGACGACACGGTTTCGAATAGTTACCGGTATCACAAGAGGACTTCTCTACCTGCATGAAGAGGCCCCAGAGAGAATTATTCACAGAGACATTAAAGCTAGTAACATATTGCTGGATGAGAAATTAAATCCGAAAATTTCAGACTTCGGTTTGGCAAGGCTGTTTCCTGGAGAGGACACTCATGTGCAGACATTTAGGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCATTGCGCGGATATCTTTCTGTAAAGACTGATGTTTTTAGTTATGGAGTCTTGGTGTTGGAAATAATTAGTGGGAGAAAAAACCATGATGTGAATCTTGGTACAGAAAAAGCAGATCTCCTAAGCTATGCATGGAAGCTTTATCAAGGAGGGAAGACAATGGATTTAATAGACCAGAGCATCGGTAAATACAACGGTGACGAGGCTGCAATGTGCATTCAGCTAGGTTTATTATGCTGTCAGGCAAGTGTAGTGGAGAGACCTGACATGAATTCAGTTCATCTAATGCTATCAAGTGATTCATTCACTTTGCCAAGACCAAGTAAACCAGGACTTCAGGGTCGTGTAGGAAAGTGGACTACAACCTCCACTTCTGCTTTGACCAATACTAATGCCAGTAGTGCAACAAGAGCCTCAGGTGGTAGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATCTCTACTTCTTCTTTTGATGAAGGGAGATAG 1167 0.4276 MSFFSSLCACLQRRLKKGATASDDEADDDKDTIDAGDSSDLLFDLHTLQLATNFFSELNQLGRGGFGPVFKGLMPNGEEVAIKKLSLESRQGIREFTNEVRLLLRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDKKRSLDWTTRFRIVTGITRGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIISGRKNHDVNLGTEKADLLSYAWKLYQGGKTMDLIDQSIGKYNGDEAAMCIQLGLLCCQASVVERPDMNSVHLMLSSDSFTLPRPSKPGLQGRVGKWTTTSTSALTNTNASSATRASGGSSFVEDYSRNSISTSSFDEGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00213 388 Pfam Protein tyrosine and serine/threonine kinase 58 319 IPR001245 GO:0004672|GO:0006468
Vivi4g00213 388 Gene3D Transferase(Phosphotransferase) domain 1 131 329 - -
Vivi4g00213 388 FunFam Cysteine-rich receptor-like protein kinase 41 131 329 - -
Vivi4g00213 388 ProSiteProfiles Protein kinase domain profile. 55 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00213 388 SUPERFAMILY Protein kinase-like (PK-like) 43 336 IPR011009 -
Vivi4g00213 388 CDD STKc_IRAK 61 323 - -
Vivi4g00213 388 SMART serkin_6 55 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00213 388 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 382 - -
Vivi4g00213 388 Gene3D Phosphorylase Kinase; domain 1 16 130 - -
Vivi4g00213 388 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 31 130 - -
Vivi4g00213 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Vivi4g00213 388 MobiDBLite consensus disorder prediction 348 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00213 Vivi-Chr4 3664927 3672643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00213 3 359 Receptor kinase-like Gene Family AT4G23150 49.030 1.24e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g00213 Pkinase 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00213 - - tpra:123884781 669.463