Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00212 ATGTTCACTTCAAGGAAGAAAATCAGCAAGGACAAGGGTGCCGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTTGAAAACACCAACCATGAGTTGAAGAGCGAGTTGAAAGATTTATACATAAACTCTGCAGTCCAAGTTGATGTTTCTGGCAACCGCAAGGCTGTTGTTATTCATGTCCCATACAGATTGAGGAAGGGTTTCCGCAAAATTCATGTCAGGCTTGTTAGGGAGCTTGAGAAGAAATTTAGCGGCAAGGACGTAATCCTGATTGCCACCAGGAGAATTGTAAGACCCCCAAAGAAGGGTTCAGCTGCTCAGCGCCCCCGCAGCAGAACACTCACTGCTGTCCATGAGGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAAAGAATTAGGTACCGAGTTGATGGATCCAAGATCATGAAGGTGTTTTTGGACCCCAAGGAGAGAAACAACACTGAGTACAAGTTGGAGACATTTTCTGCAGTTTATAGGAAATTGTCTGGCAAAGATGTTGTGTTTGAGTATCCCATTACCGAGGCTTAG 576 0.4497 MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRIRYRVDGSKIMKVFLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPITEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00212 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vivi4g00212 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vivi4g00212 191 Coils Coil 27 47 - -
Vivi4g00212 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00212 Vivi-Chr4 3662205 3664358 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00212 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 81.152 2.90e-116 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00212 K02993 - qsa:O6P43_008566 357.066