Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00196 ATGGAGGAAAATCTACCTCCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATTACTCATTATCTTACAATGAAAATTTCTGATACTTCCTTCTCATCAAAAGCTGTTGCAGTTGTTGATCTCAACAAATCTGAACCTTGGGATCTCCCAGGTAAAGCTTCAATGGGAGAGAAAGAATGGTATTTCTTCAGCATGAGAGATAGAAAATATCCAACTGGTCTTCGAACCAATCGAGCAACAGAATCAGGATACTGGAAAACAACAGGAAAAGATAGAGAAATATTTCGTGGTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTTTTCTATAAGGGTAGAGCTCCAAGGGGTGAGAAAAGTAATTGGGTTATGCATGAATATAGACTAGAAAATAAACACCATTTTCGAACCTCAAAGGATGAATGGGTGGTATGTAGGGTTTTCCAAAAGAGCATAGCAACAAAAAAGCCACAACAAACATCATCTTCCCAACCAGAATCTCCATGTGACACTACCTCAATGGTGAATGAATTTGGTGATGTAGACTTTCCAAATCTAAATGGTCTAGCAACAAACTCATCATCATCATTATCAAGTGGACTAATCACTAACATGATTTCAGGACACCAACAATCTTTCAACATTAATGATCATCTCAATAATAATGTCAACACAAATATGAACTTGATGACAATGAATTGGCCTTCTTCAAGTGAAGTTCCATCTCTACCATGGCCTTCTAACTTGTTGAATCCAAATAACATTTCTGTAAATTCATTGCTTCTAAAAGCATTACAACTTAGGAATTATCAACAACAAAGAGAAGTGGCAGCTACAAATCATTTTGTACCATACATGCCTCAACAAGGAGTAGTATATCATGATCATCAACTTGGAAGTGATCACCAAAGTAATAATTCAAATGATCCAAGTGCTTCTTCTTCAAAAGTTTTAGAGTGTATGCCACAACAACATCAACAGGAGCAACCATTTAATTTGGACTCCATTTGGTGA 1017 0.3648 MEENLPPGFRFHPTDEELITHYLTMKISDTSFSSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSMRDRKYPTGLRTNRATESGYWKTTGKDREIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSIATKKPQQTSSSQPESPCDTTSMVNEFGDVDFPNLNGLATNSSSSLSSGLITNMISGHQQSFNINDHLNNNVNTNMNLMTMNWPSSSEVPSLPWPSNLLNPNNISVNSLLLKALQLRNYQQQREVAATNHFVPYMPQQGVVYHDHQLGSDHQSNNSNDPSASSSKVLECMPQQHQQEQPFNLDSIW 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00196 338 MobiDBLite consensus disorder prediction 299 318 - -
Vivi4g00196 338 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Vivi4g00196 338 FunFam NAC domain-containing protein 100-like 14 155 - -
Vivi4g00196 338 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vivi4g00196 338 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 251 - -
Vivi4g00196 338 MobiDBLite consensus disorder prediction 298 318 - -
Vivi4g00196 338 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Vivi4g00196 338 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00196 Vivi-Chr4 3516038 3518585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00196 1 338 NAC Transcription Factor Family AT3G18400 55.620 1.96e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi4g00196 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00196 - - gmx:100787111 438.343