Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00192 ATGAACTTATGGCCGTTCAAAGTCATAGCTGACGCAAACAACAAGCCCATGATTGCTGTAAAGTATAAGGGTCAGGAGAAGAGCCTATGTGCGGAGGAGGTTTCATCAATGATCCTCACAAAGATGCGGGAGATTGCGGAGGCACATTTGGAATCACCTGTTAAGAATGCAGTTATCACTGTGCCTGCTTATTTCAATGATTCTCAGTGTAAAGCCACCATAGATGCTGGTGCTATTGCTGGCCTAAATGTTATGCGGATAATGAGCGAGCCTACTGCTGCAGCTATTGCATATGGCCTTGACAAGAAAACTTCTTGTGTGGGAGAACGGAATATTTTTGTATTTGACCTTGGTGGTGGAACTTTTGACGTGTCTCTTGTTACAATTAAGGATAAGGTCTTCCTAGTTAAGGCAACGGCTGGAAACACTCACCTTGGTGGAGAGGACTTCGATGGCCGAATGGTTAAATTACTTTGTTGA 480 0.4396 MNLWPFKVIADANNKPMIAVKYKGQEKSLCAEEVSSMILTKMREIAEAHLESPVKNAVITVPAYFNDSQCKATIDAGAIAGLNVMRIMSEPTAAAIAYGLDKKTSCVGERNIFVFDLGGGTFDVSLVTIKDKVFLVKATAGNTHLGGEDFDGRMVKLLC 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00192 159 PRINTS 70kDa heat shock protein signature 57 77 - -
Vivi4g00192 159 PRINTS 70kDa heat shock protein signature 120 130 - -
Vivi4g00192 159 ProSitePatterns Heat shock hsp70 proteins family signature 2. 114 127 IPR018181 -
Vivi4g00192 159 FunFam Endoplasmic reticulum chaperone BiP 7 138 - -
Vivi4g00192 159 SUPERFAMILY Actin-like ATPase domain 3 102 IPR043129 -
Vivi4g00192 159 Pfam Hsp70 protein 2 158 IPR013126 GO:0005524|GO:0140662
Vivi4g00192 159 Gene3D - 103 145 - -
Vivi4g00192 159 PANTHER HEAT SHOCK PROTEIN 70KDA 1 157 IPR013126 GO:0005524|GO:0140662
Vivi4g00192 159 Gene3D - 38 102 - -
Vivi4g00192 159 Gene3D Actin; Chain A, domain 4 146 158 - -
Vivi4g00192 159 FunFam Heat shock protein ssb1 1 37 - -
Vivi4g00192 159 SUPERFAMILY Actin-like ATPase domain 109 158 IPR043129 -
Vivi4g00192 159 Gene3D - 2 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00192 Vivi-Chr4 3486286 3486765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00192 1 155 Calmodulin-binding Proteins AT5G02500 72.258 3.95e-78 239