Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00185 ATGGCAAAGGCAAGGGATAGGACTGAGGATTTCAAAGACGCCGTTCGTCAAAGTGCTCGGTCTTTGGGGTATGATGAGGCTAAATTGGCATCCATTTTGGCATCTTTCATTATTCATAAACCTCCACAAAGGTCCCCATTCTCCAAAGCTGCATTTAAGACGCTCGAGAGTATTGGAGAATTGGATCATTTTTTGTTAAAGCATAGAAAGGACTATACAGATCTGCACCGAACAACTGAACATGAGAGAGATAGCATTGAGCATGAAGTTAGTGCTTTTATTAAAACTTGCCAACAACAAATTGATGTTCTCAAGAATAGTATAAACAATGAAGAGGAAAACTCAAAAGGGTGGCTTGGTATTACAACTGCAAAGGCTAACGCTGACACCATTGCCCACAAACATGGAGTGGTTTTAATTTTAAGTGAGAGACTCCATTCAGTTACGGCGCAGTTTGATCAGCTCAGAGCTATACGCTTCCAGGATGCCATTAATAGGGCTATACCACGAAGAAAACTTAATCGTATAACCAAAAAAGATTCCACTGAAACCTCTAATTCAGGTGATGCGGAGCTCAGGGAACCTGATGAGCTGCGCAGTGAGCCTCTAAGAGTCCAGCATCAACTCTTGGACGATGAAACACGTGCCCTTCAGGTGGAATTGACTAGTCTTCTAGACACAGTTCAAGAAACTGAAACTAAGATGGTAGAAATGTCTGCATTAAATCACTTGATGGCTACACATGTATTACAACAAGCTCAACAAATTGAGCATCTATATGACCAGGCTGTTGAAGCTACTAAGAATGTTGAGCTTGGTAACAAAGAACTCTCACAAGCCATTCAGCGGAATAGTAGCAGCAGAACATTTCTTTTACTATTTCTGTTTGTGCTCACTTTTTCAATCATCTTTCTTGATTGGTATAGCTAA 930 0.4075 MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFSKAAFKTLESIGELDHFLLKHRKDYTDLHRTTEHERDSIEHEVSAFIKTCQQQIDVLKNSINNEEENSKGWLGITTAKANADTIAHKHGVVLILSERLHSVTAQFDQLRAIRFQDAINRAIPRRKLNRITKKDSTETSNSGDAELREPDELRSEPLRVQHQLLDDETRALQVELTSLLDTVQETETKMVEMSALNHLMATHVLQQAQQIEHLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLDWYS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00185 309 Pfam SNARE-complex protein Syntaxin-18 N-terminus 6 86 IPR019529 -
Vivi4g00185 309 PANTHER SYNTAXIN-18 1 309 - -
Vivi4g00185 309 MobiDBLite consensus disorder prediction 175 198 - -
Vivi4g00185 309 SUPERFAMILY t-snare proteins 56 273 IPR010989 GO:0016020|GO:0016192
Vivi4g00185 309 Coils Coil 94 114 - -
Vivi4g00185 309 Gene3D - 212 306 - -
Vivi4g00185 309 FunFam Syntaxin-81 like 212 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00185 Vivi-Chr4 3438410 3443410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00185 65 309 SNARE and Associated Proteins AT1G51740 74.797 1.50e-117 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00185 K08492 - gmx:100778011 534.643