Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00183 ATGAGGAGAAAACAGCATTATTCGAATCCGTCGTGTGTTTTTGTTCTCCTCTTTTCATTCTTCCTAGGTTTAACCACACTACTCCCTTCTGTTGTTTCATCGTATCATGTCTCAGATGGGTCCCTCACGGAAGCCGAAACGATGTACATCAAACATCGACAACTTCTTTACTACAGAGACGAGTTCGGTGATAGAGGTGAAAATGTTACGGTGGATCCATCTCTAGTTTTTCAAAACGACCGCATCAAAAACGCTTACGTGGCGTTACAAGCTTGGAAACAAGCTATTCTTTCTGATCCAAACAATTGCACCGTTGATTGGGTGGGTTCCAATGTGTGCAAGTACAGTAATGTTTTCTGTGCACCCGCATTGGATAACCGTCAGATCCAAACGGTCGCCGGAATCGATCTAAATCACTGTGATATCGCCGGATATTTGCCGGAGGAGCTTGGTTTGTTAACCGATCTTGCTCTTTTCCATGTGAATACCAACAGATTCTGTGGAACGGTTCCTCATAAATTCGAGAAGCTGAAAATCTTGTTCGAGTTGGATCTCAGTAATAACCGCTTCGCCGGGAAGTTCCCGGAGGTTGTTCTCCGGTTACCGTTGTTGAAGTTTCTAGATCTGAGATTTAATGAGTTTGAAGGTACGGTTCCCAAGGCGCTTTTTGATAAAGATTTGGACGCGATTTTCATCAATCATAATCGGTTTGTGTTCGATTTGCCGGATAATTTCGGTAATTCGCCGGTTTCGGTTATCGTTCTGGCGAATAACCGTTTTCACGGTTGTTTTCCGGCGGGGATTGGAAACATGACGAATTTGAACGAGATTATTGCGATGAACAACGGTTTGCAGTCGTGTTTGCCGGCGGAGATAGGGTTGTTGAAGAATTTGACGGTGTTTGATGTTAGTTTTAACAAATTGTTGGGGCCGTTGCCGGCGGCGATTGGGAATGCGGTGGGGTTGGAACAGTTGAACGTGGCGCATAATATGCTTTCTGGTCAGATTCCGGAGAGTATTTGTAAGTTGCCGAATTTGGAGAACTTTACTTACTCGTATAATTTCTTTTCCGGCGAACCGCCACGGTGTTTGGGTTTACCGGCTTTTGATGATGAACGGAACTGTTTGCCGGCGAGAAAGAATCAACGGTCGGCGAGGGAATGTAAGTCGTTTTTGTCTCACCCTATTGATTGCAGCTCTTTTAGGTGTAAAGCTTTTGTTCCTTCTTTGCCTTCACCACCACCTTCTCCACCTGTTGTTGTTATTCCACAATCTCCTCCTCCACCGGTGCTTTCTCCACCACCACCACCACCGGTTATTATCCCTCCACCTTCGCCTGTGTTTTCACCACCTCCACCAGTATTATCACCACCACCTCCACCTCCGCCTGTGTTTTCACCACCACCTCCACCTCCACCAGTATATTCGCCACCTCCTCCTCCTCCCTCACCGCCTCCCCCTTCACCTCCACCACCACCTCCTCCAGTTTATTCACCACCCCCGCCTCCACCATCACCACCACCACCTTCTCCACCACCACCACCTCCACCAGTGTATTCTCCACCACCACCTCCACCCTCACCTTCACCCCCACCACCGTCACCACCTCCTCCAGTTTATCTACCACCTCCACCACCACCACCACCACCACCGCCACCTCCTCCAGTTAACTCACCACCACCACCAAGTCCTTCACCACCCTATTGTGTTAGGTCTCCGCCACCTCCACCACCCAATTCACCACCTCCACCACCTCCACCAGCTCCTGTATTCTCCCCACCACCGCCTGTACCTTACTATTATAGCTCACCGCCTCCACCACCATCTCAGTCACCTCCACCACCTCCTCATTCGCCTCCACCACCACCTCATTCGCCTCCCCCACCGCACTCTCCTCCACCACCTGTTTATCAATATTTATCACCTCCACCACCTCCTCCAGTTCACTCACCACCACCCCCAGTCCATTCACCACCACCACCATCTCCACCACCTTGTATAGAACCCCCACCACCACCTCCATCACCTCCTCCTTGTGAAGAACAATCACCACCACCACCACCCTATCAAACACCTTATCTCCCACCACCATCCCCATCACCACCACCAGTCTATTCCTCCCCTCCTCCAGCACCAGTTTATGCCTCTCCACCACCACCAACACCAGTCTATTCATCACCTCCACCACCAGTTCATTACGAATCACCACCACCGCCATCACCAGTCTATTCTTCACCTCCACCACCAATTCAATACAATTCACCACCACCACCAACACCTGTATATGAAGGGCCATTACCACCAGTCTTTGGAGTCTCGTATGCATCACCGCCACCACCACCCTTTTATTAA 2352 0.4991 MRRKQHYSNPSCVFVLLFSFFLGLTTLLPSVVSSYHVSDGSLTEAETMYIKHRQLLYYRDEFGDRGENVTVDPSLVFQNDRIKNAYVALQAWKQAILSDPNNCTVDWVGSNVCKYSNVFCAPALDNRQIQTVAGIDLNHCDIAGYLPEELGLLTDLALFHVNTNRFCGTVPHKFEKLKILFELDLSNNRFAGKFPEVVLRLPLLKFLDLRFNEFEGTVPKALFDKDLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNRFHGCFPAGIGNMTNLNEIIAMNNGLQSCLPAEIGLLKNLTVFDVSFNKLLGPLPAAIGNAVGLEQLNVAHNMLSGQIPESICKLPNLENFTYSYNFFSGEPPRCLGLPAFDDERNCLPARKNQRSARECKSFLSHPIDCSSFRCKAFVPSLPSPPPSPPVVVIPQSPPPPVLSPPPPPPVIIPPPSPVFSPPPPVLSPPPPPPPVFSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPSPPPPSPPPPVYLPPPPPPPPPPPPPPVNSPPPPSPSPPYCVRSPPPPPPNSPPPPPPPAPVFSPPPPVPYYYSSPPPPPSQSPPPPPHSPPPPPHSPPPPHSPPPPVYQYLSPPPPPPVHSPPPPVHSPPPPSPPPCIEPPPPPPSPPPCEEQSPPPPPYQTPYLPPPSPSPPPVYSSPPPAPVYASPPPPTPVYSSPPPPVHYESPPPPSPVYSSPPPPIQYNSPPPPTPVYEGPLPPVFGVSYASPPPPPFY 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00183 783 PRINTS Proline rich extensin signature 421 437 - -
Vivi4g00183 783 PRINTS Proline rich extensin signature 461 482 - -
Vivi4g00183 783 PRINTS Proline rich extensin signature 448 460 - -
Vivi4g00183 783 PRINTS Proline rich extensin signature 407 419 - -
Vivi4g00183 783 Gene3D Ribonuclease Inhibitor 86 245 IPR032675 -
Vivi4g00183 783 Gene3D Ribonuclease Inhibitor 246 376 IPR032675 -
Vivi4g00183 783 MobiDBLite consensus disorder prediction 451 770 - -
Vivi4g00183 783 FunFam Leucine-rich repeat extensin-like protein 5 248 387 - -
Vivi4g00183 783 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 525 - -
Vivi4g00183 783 FunFam Leucine-rich repeat extensin-like protein 1 86 247 - -
Vivi4g00183 783 SUPERFAMILY L domain-like 86 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00183 Vivi-Chr4 3046366 3049671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00183 42 457 Leucine-rich Repeat extension Gene Families AT3G24480 70.983 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00183 - - ccaj:109813452 639.802