Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00178 ATGGCGAGTCGGTTAAGGGAAGATGAGAAACACGAGCGCGCCATTCGAGCTCTTCTTAGGCTCGAACCGAATCGGAGATGCATTAACTGCAACAGTTTGGGACCACAATATGTGTGCACAGATTTCTGGACGTTTATTTGCACTAATTGTAGTGGAATACACCGTGAATTTACACATCGTGTGAAGTCAGTTTCAATGGCTAAATTTACTTTGCAAGAAGTTACCGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAAATGTTTATTTTAAAGAATGGGATGCACAACATCATTCTTTCCCTGACAGTGATAATGTTAACAGGCTCCGAGAGTTTATTAAGCATGTTTATGTGGATGGGATATTCACTGGAGATAGTACCTCTGACAAACTACCAAGAGTGAAAAACGGTGGTGACAAAGATGGATCATATGAAAACAGGAGAGTTGAGGCATATCAGGGAGGATCTAAAAGCCCTCCATATAAAGACTCACATGAACATCGTTATAGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAAGTTGGTGATTATAAGAGAAGTCCTGGTCGTCCTCCAATTATCAATGATCGGCGTCGTGAAGATCGTAGAACATCCGATGGAGATTATAAGACGGAAAGTCAATCCCCTGTGCAAGCCAGAAATCCGGGCTCTTCTAGCCCACCCGTGGGCAAACCCGTTCAAGAAATTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGACCCCCCAAACCAAACAATGGAAAAGCTGCCGATGCCTCAGCACTGACACAGAGAACTGCATCCTCTGGTAGCTTGGTATCCAGTAATGAAAGCCAAGTAAATATTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCCGAACCTATTGCTCCCACAATTCGTCAAGCCCAACAAACCAGTGCGCCTCAACCTGTTTTGCAGCCAGGAAATTCCAGTGATGACAATTGGGCCTCTTTTGATATTGCTTCTGAGGCGAAAGCAAATCAAAGCACCTCAAATTTAAATCCACTTGAATCCGTACTGTCCCAATTGTCTTATTCGGCATCTATATCTTCTAATGCTCCGGGAGTCCAAGGACCAATTCCAGCAGGGGCTCTTAGTTTTGGCAGTTTATCATCTTTCCCATCCAATGGTGCTTCAATGCCATCTTCCAGACTGGCAGGTGTATTACCTCATAATAATGTAGGACAGTGGGCTAGTTCGCAGCATCAGCAACCAATGTTCTCTGCTGTAAGTAGTCAGCCATCGCATGTACCTTCTGTACCCACAGGGCAGAGGTATCCAAATACACCAATTCCACATGCATACCATCATGCTTCGGAGCTGGCCAATGAGGCTTTCAATAGTATTCTTTCTCAACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACTGAACTTTCTGAAGATCTGTTCACTACAAAACACTCTTCCTTCTCTGCACCAGTTCAAGGTTGGCAGGCGGGTCTTCCCCAGGGCGCGGGCAGCTCAGTGCAATATAATAGCAATGTGGCGCCAATACCAAGTTTTTCGGAGCCATCAAGGTCAACAAACCCATTTGATGTCAGCAGCAAACAGTACCCAGATCAAGATCCAAGTTTTCTTTCCATTTCATCCTTGCATAGTGCGATGCCTAGTGTGTCGCCATCACTCCCGATGCACCCTCCATGCCAGAGCAATCCATTGCTTGCATGGAGTCCACCTCTTCCTGATGCAGCAGGCACTATGCACTCTTCAAGCCGAGGTCTTCAACCAGATGCATGGAATCCACCCCTGCCATCCTTTCAAGCTGCCCCGCCTAATGTACCATCTTCAGGCACTTTGCCCCCTTCAAGCCTGGGCAATCCATCCCATGCCTGGAATCCAACCCTATCGTCACCATATGCATCATTCCTACCTCCACAAGCACCAATTCATGCATCAGCATTGGGACCAGGGTCTAACAATGGGCAGCAAATGCCAACTAACACACCAATGCCAAGGCAAGAAGCTGGGAATTTTGGAGCTGAGCGAGACATTTTCGCCTTGTCAAATCCAGATCAGCAGCCGACTGATAAGCCGTCAACCACTCCCACCTCTAACCCCTTCCCTAAAGGAGGCAACCCATTCGCATAA 2175 0.463 MASRLREDEKHERAIRALLRLEPNRRCINCNSLGPQYVCTDFWTFICTNCSGIHREFTHRVKSVSMAKFTLQEVTALQEGGNQRARNVYFKEWDAQHHSFPDSDNVNRLREFIKHVYVDGIFTGDSTSDKLPRVKNGGDKDGSYENRRVEAYQGGSKSPPYKDSHEHRYSDRSSPGGRSPGYDQESRQVGDYKRSPGRPPIINDRRREDRRTSDGDYKTESQSPVQARNPGSSSPPVGKPVQEILGENVVPLRISGPPKPNNGKAADASALTQRTASSGSLVSSNESQVNIKLETTKSLIDFDADPEPIAPTIRQAQQTSAPQPVLQPGNSSDDNWASFDIASEAKANQSTSNLNPLESVLSQLSYSASISSNAPGVQGPIPAGALSFGSLSSFPSNGASMPSSRLAGVLPHNNVGQWASSQHQQPMFSAVSSQPSHVPSVPTGQRYPNTPIPHAYHHASELANEAFNSILSQPSAVEVKPSGRTELSEDLFTTKHSSFSAPVQGWQAGLPQGAGSSVQYNSNVAPIPSFSEPSRSTNPFDVSSKQYPDQDPSFLSISSLHSAMPSVSPSLPMHPPCQSNPLLAWSPPLPDAAGTMHSSSRGLQPDAWNPPLPSFQAAPPNVPSSGTLPPSSLGNPSHAWNPTLSSPYASFLPPQAPIHASALGPGSNNGQQMPTNTPMPRQEAGNFGAERDIFALSNPDQQPTDKPSTTPTSNPFPKGGNPFA 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00178 724 MobiDBLite consensus disorder prediction 303 354 - -
Vivi4g00178 724 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vivi4g00178 724 CDD ArfGap_AGFG 12 119 - -
Vivi4g00178 724 MobiDBLite consensus disorder prediction 662 682 - -
Vivi4g00178 724 MobiDBLite consensus disorder prediction 656 724 - -
Vivi4g00178 724 MobiDBLite consensus disorder prediction 132 147 - -
Vivi4g00178 724 MobiDBLite consensus disorder prediction 612 626 - -
Vivi4g00178 724 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vivi4g00178 724 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vivi4g00178 724 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vivi4g00178 724 MobiDBLite consensus disorder prediction 127 290 - -
Vivi4g00178 724 MobiDBLite consensus disorder prediction 266 290 - -
Vivi4g00178 724 PANTHER ARFGAP/RECO-RELATED 1 584 IPR044820 GO:0005096
Vivi4g00178 724 MobiDBLite consensus disorder prediction 187 217 - -
Vivi4g00178 724 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vivi4g00178 724 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Vivi4g00178 724 MobiDBLite consensus disorder prediction 697 717 - -
Vivi4g00178 724 MobiDBLite consensus disorder prediction 525 639 - -
Vivi4g00178 724 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vivi4g00178 724 MobiDBLite consensus disorder prediction 218 236 - -
Vivi4g00178 724 MobiDBLite consensus disorder prediction 525 566 - -
Vivi4g00178 724 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Vivi4g00178 724 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vivi4g00178 724 MobiDBLite consensus disorder prediction 312 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00178 Vivi-Chr4 3003776 3010514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00178 12 117 C2H2 Transcription Factor Family AT4G05330 34.234 1.37e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00178 - - psat:127116115 1147.11