Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00175 ATGGCGAGTCGGTTAAGCGAAGATGAGAAACACGAGCGCGCCATTCGAGCTCTTCTTAGGCTCGAACCGAATCGGAGATGCATTAACTGCAACAGTTTGGGACCACAATATGTGTGCACAGATTTCTGGACGTTTATTTGCACAAATTGTAGTGGAATACACCGTGAATTTACACATCGTGTGAAGTCAGTTTCAATGGCTAAATTTACTTTGCAAGAAGTTACCGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAAATGTTTATTTTAAAGAATGGGATGCACAGCATCATTCTTTCCCTGACAGTGATAATGTTAACAGGCTCCGAGAGTTTATTAAGCATGTTTATGTGGATAGGATATTCACCGGAGATAGTACCTCTGACAAACTACCAAGAGTGAAAAACGGTGGTGACAAAGATGGATCATATGAAAACAGGAGAGTTGAGGCATATCAGGGAGGATCTAAAAGCCCTCCATATAAAGACTCACATGAACGTCGTTATAGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAAGTTGGTGATTATAAGAGAAGTCCCGGTCGTCCTCCAATTATCAATGATCGGCGTCGTGAAGATCGTAGAATATCCGATGGAGATTATAAGACGGAAAGTCAATCCCCTGTGCAAGCCAGAAATCCGGGCTCTTCTAGCCCACCCGTGGGCAGACCCGTTCAAGAAATTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGACCCCCCAAACCAAACAATGGAAAAGCTGCCGATGCCTCAGCACTGACACAGAGAACTGCATCCTCTGGTAGCTTGGTATCCAGTAATGAAAGCGAAGTAAATATTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTATTGCTCCCACAATTCCTCAAGCCCAACAAACCAGTGCGCCTCAACCTGTTTTGCAGCCAGGAAATTCCAGTGATGACAATTGGGCCTCTTTTGATATTGCTTCTGAGGCGAAAGCAAATCAAAGCACCTCAAATTTAAATCCACCTGAATCCGTACTGTCCCAATTGTCTTATTCGGCATCTATATCTTCTAATGCTCCGGGAGTCCAAGGACCAATTCCAGCAGGGGCTCTTAGTTTTGGCAGTTTATCATCTTTCCCATCCAATGGTGCTTCAATGCCATCTTCCAGACTGGCAGGTGTATTACCTCATAATAATGTAGGACAGTGGGCTAGTTCGCAGCATCAGCAACCAATGTTCTCTGCTCCATCGCATGTACCTTCTGTACCCACAGGGCAGAGGTATCCAAATACACCAATTCCACATGCATACCATCATGCTTCGGAGCTGGCCAATGAGGCTTTTAATAGTACTCTTTCTCAACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACTGAACTTTCTGAAGATCTGTTCACTACAAAACACTCTTCCTTCTCTGCACCAGTTCAAGGTTGGCAGGCGGGTCTTCCCCAGAGCACGGGCAGCTCAATGCAATATAATAGCAATGTGGCGCCAATACCAAGTTTTTTGGAGCCATCAAGGTCAACAAACCCATTTGATGTCAGCAGCAAACAGTACCCAGATCAAGATCCAAGTTTTCTTTCCATTTCATCCTTGCATAGTGCGATGCCTAGTGTATCGCCATCACTCCCGATGCACCCTCCATGCCAGAGCAATCCATTGCTTGCATGGAGTCCACCTCTTCCTAATGCAGAAGGCACTATGCACTCTTCAAGCCGAGGTCTTCAACCAGATGCATGGAATCCACCCTTGCCATCCTTTCAAGCTGCCCCACCTAATGTACCATCTTCAGGCACTTTGCACCCTTCAAGCCTGGGCAATCCATCCCATGCCAGGAATCCAACCCTATCGTCACCATATGCATCATTCCTACCTTCCCAAGCACCAATTCATGCATCAGCATTGGGACCAGGGTCTAACAATGGGCAGCAAATGCCAACTAACACACCAATGCCAAGGCAAGAAGCTGGGAATTTTGGAGCTGAGCGAGACATTTTCGGCTTGTCAAATCCAGATCAGCAGCCTACTGATAAGCCGTCAACCACTCCCACCTCTAACCCCTTCCCTAAAGGAGGCAACCCATTCGCATAA 2163 0.4595 MASRLSEDEKHERAIRALLRLEPNRRCINCNSLGPQYVCTDFWTFICTNCSGIHREFTHRVKSVSMAKFTLQEVTALQEGGNQRARNVYFKEWDAQHHSFPDSDNVNRLREFIKHVYVDRIFTGDSTSDKLPRVKNGGDKDGSYENRRVEAYQGGSKSPPYKDSHERRYSDRSSPGGRSPGYDQESRQVGDYKRSPGRPPIINDRRREDRRISDGDYKTESQSPVQARNPGSSSPPVGRPVQEILGENVVPLRISGPPKPNNGKAADASALTQRTASSGSLVSSNESEVNIKLETTKSLIDFDADPEPIAPTIPQAQQTSAPQPVLQPGNSSDDNWASFDIASEAKANQSTSNLNPPESVLSQLSYSASISSNAPGVQGPIPAGALSFGSLSSFPSNGASMPSSRLAGVLPHNNVGQWASSQHQQPMFSAPSHVPSVPTGQRYPNTPIPHAYHHASELANEAFNSTLSQPSAVEVKPSGRTELSEDLFTTKHSSFSAPVQGWQAGLPQSTGSSMQYNSNVAPIPSFLEPSRSTNPFDVSSKQYPDQDPSFLSISSLHSAMPSVSPSLPMHPPCQSNPLLAWSPPLPNAEGTMHSSSRGLQPDAWNPPLPSFQAAPPNVPSSGTLHPSSLGNPSHARNPTLSSPYASFLPSQAPIHASALGPGSNNGQQMPTNTPMPRQEAGNFGAERDIFGLSNPDQQPTDKPSTTPTSNPFPKGGNPFA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00175 720 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vivi4g00175 720 MobiDBLite consensus disorder prediction 132 147 - -
Vivi4g00175 720 MobiDBLite consensus disorder prediction 615 648 - -
Vivi4g00175 720 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Vivi4g00175 720 MobiDBLite consensus disorder prediction 525 720 - -
Vivi4g00175 720 MobiDBLite consensus disorder prediction 187 217 - -
Vivi4g00175 720 PANTHER ARFGAP/RECO-RELATED 1 720 IPR044820 GO:0005096
Vivi4g00175 720 MobiDBLite consensus disorder prediction 525 562 - -
Vivi4g00175 720 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vivi4g00175 720 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vivi4g00175 720 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vivi4g00175 720 MobiDBLite consensus disorder prediction 693 713 - -
Vivi4g00175 720 MobiDBLite consensus disorder prediction 127 359 - -
Vivi4g00175 720 CDD ArfGap_AGFG 12 122 - -
Vivi4g00175 720 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vivi4g00175 720 MobiDBLite consensus disorder prediction 218 236 - -
Vivi4g00175 720 MobiDBLite consensus disorder prediction 657 678 - -
Vivi4g00175 720 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vivi4g00175 720 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Vivi4g00175 720 MobiDBLite consensus disorder prediction 312 359 - -
Vivi4g00175 720 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vivi4g00175 720 MobiDBLite consensus disorder prediction 266 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00175 Vivi-Chr4 2973150 2979814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00175 12 117 C2H2 Transcription Factor Family AT4G05330 34.234 1.46e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00175 - - psat:127116115 1128.62