Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00170 ATGACTGTAAAGAAACAGGACTCGAAAAAAGTTTCTGGCCTCGGCAATCAATCTTCAAGGAAGCTTCATCGCAAAGGAGAGAACCCTATTCGATTCGTACCAGCTGCTGATCCTCCTCCTGATAACTCACATCCAAACTCGTGGATCTGTAAAAACTCCGCTTGCAGGGCAGTTTTATCCAAAGAGGACACGTTCTGTAGAAGGTGCTCTTGCTGTATTTGCCATCTTTTCGATGATAACAAAGATCCTAGCCTTTGGTTGGTATGCAGTGAATCTTCCCAAGGGGACTCGTGTGGATTGTCTTGCCATATTGAGTGTGCCCTTCAACATGAAAAAGTCGGAGTTGTTGATCATGGACAACTTATGCAACTCGATGGTGGTTATTGTTGTGCCTCCTGTGGTAAAGTTACCGGGATACTTGGATGTTGGAAGAAGCAGCTAAACATAGCGAAAGATGCTCGGCGCGTGGACATACTATGTTACAGGATATATTTGAGCTACAGGCTTCTGAATGGTACAGTGAAATTTAAAGAATTGCATGACATGGTACAAGAGGCAAAGGCTAAACTGGAAAAGGAAGTTGGTCCAGTTGACGGCGTTTCTTCCAAGATGGCACGTGGCATTGTCAGCAGACTCCCTATTGCCGGTGACGTGCAGAAACTTTGTTCCCTTGCTATCGAGAAAGCTAATAACTGGTTGGCTACTGATGACAATCCCGAATCCAAAGAGGGTTCACTTCCTGCTGCATGTAAGTTTGTGTTTGAAGAGATAACAGCTTCCTCAGTCAAGATCATTTTACTTGAAATGTCGAATTTAACTTCCGAAGACATTAAGGGATTCAAGCTCTGGTATTACAAGAGTAGGGTGGAATCACACACACAAGAACCTGTTTGTGTGTTTCCAAAAGCTCAGAGGAGGATTTTGATATCCAACCTCCAGCCTTGCACAGAATATACTTTTCGGATTGTGTCTTATACAGATATCGGTGACCTTGGTCATTCGGAAGCTAAGTGTTTCACCAAAAGTGTTGAGATATTGGAAAAGATTCCGACTTCATCAATTGACATGAATACTAAGAAGGAGAATACTCAATCTGGAGAAGGCAATGAATCGGGATCCAAAATAGAGCCCGATTCTACGATGGCAGACTCTGGATTCAAGGTTCGAGACCTTGGGAAGATTTTGCACCTTGCATGGGCTCAAGAACAAGGTTGCATTGAGGGGTTTTGTCGTTCCGATACAAAAAACTGCTGTGGTCAAATTGAAACGGTCAAGCCTAGCAACCCGGTTGAGCAGTCAGCGCCGCCTTTGGTTTCTCGAGACCTTGATCTCAATGTTAGCTCTGTGCCTGACTTAAACGAAGAACTCACTCCTCCTTTCGAGTCTTCTCGTGATGAGGACAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGACGATGCTGCTTCTCACGATTTAGAGAAAAACCTAGCAAGACCACATGGTAGCGGTGGTTCTGAAACATGGAACCATAAACCAGCCGGAGAAGTTCCGGCCGTTGACTCGCGCGTAGTCTTAGAAGCAAGTAGGAAAAGGGTAGCAAGCACAAATGAAGAAACACATGACTGTGACAGCACCTTAATAAACAGTTCTCCTTTACACATACCCGACGGTTCATTCTCCTTAGACGAGAACTTCGAGTATTGTGTTAAAGTAATTCGTTGGCTCGAATGTCAGGGTCACATCAAGCAAGAGTTTAGGCTGAAATTACTTACATGGTTTAGTTTGAGGTCGACAGATCAAGAACGTAGGGTGGTTAATACTTTCATTCAGACACTGATCGATGATCCGAGTAGTTTGGCAGGTCAACTAGTTGACTCTTTTTCTGATATTATATCCAACAAGAGGCCCCGAAATGGATTCAATAACAAGGTTGTGTCGTTAAATTAA 1932 0.4394 MTVKKQDSKKVSGLGNQSSRKLHRKGENPIRFVPAADPPPDNSHPNSWICKNSACRAVLSKEDTFCRRCSCCICHLFDDNKDPSLWLVCSESSQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDILCYRIYLSYRLLNGTVKFKELHDMVQEAKAKLEKEVGPVDGVSSKMARGIVSRLPIAGDVQKLCSLAIEKANNWLATDDNPESKEGSLPAACKFVFEEITASSVKIILLEMSNLTSEDIKGFKLWYYKSRVESHTQEPVCVFPKAQRRILISNLQPCTEYTFRIVSYTDIGDLGHSEAKCFTKSVEILEKIPTSSIDMNTKKENTQSGEGNESGSKIEPDSTMADSGFKVRDLGKILHLAWAQEQGCIEGFCRSDTKNCCGQIETVKPSNPVEQSAPPLVSRDLDLNVSSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLEKNLARPHGSGGSETWNHKPAGEVPAVDSRVVLEASRKRVASTNEETHDCDSTLINSSPLHIPDGSFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTDQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFNNKVVSLN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00170 643 Pfam PHD - plant homeodomain finger protein 50 167 IPR032881 -
Vivi4g00170 643 PANTHER VIN3-LIKE PROTEIN 2-RELATED 7 639 IPR044514 GO:0010048|GO:0040029
Vivi4g00170 643 MobiDBLite consensus disorder prediction 356 378 - -
Vivi4g00170 643 Gene3D Immunoglobulins 240 344 IPR013783 -
Vivi4g00170 643 CDD FN3 251 330 IPR003961 GO:0005515
Vivi4g00170 643 MobiDBLite consensus disorder prediction 1 43 - -
Vivi4g00170 643 SUPERFAMILY Fibronectin type III 254 335 IPR036116 GO:0005515
Vivi4g00170 643 MobiDBLite consensus disorder prediction 356 381 - -
Vivi4g00170 643 CDD PHD_VIN3_plant 70 133 - -
Vivi4g00170 643 MobiDBLite consensus disorder prediction 489 509 - -
Vivi4g00170 643 ProSiteProfiles Fibronectin type-III domain profile. 246 345 IPR003961 GO:0005515
Vivi4g00170 643 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00170 Vivi-Chr4 2934984 2941188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00170 46 634 PHD Gene Family AT3G24440 48.841 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00170 - - gmx:100780157 1104.35