Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00165 ATGTCGAGATCGTTGGTTCAACCCGTAGGCCAAAAGCGATTAACAAACGTAGCAGTTGTTCGTCTCAAAAAGCACGGCATGCGATTCGAAATCGCTTGTTACCCTAACACCGTCCTTTCTTGGCGTTCCGGCGTTGAAAAGGATATTGATGAAGTGGTGCAGTCTCATACGGTTTATACCAATGTTTCTAAAGGCGTTCTTGCTAAGTCTAAGGATTTGAACGCTGCTTTTGGTACTGACGATCACTCCAGTATTTGTTTAGAGATTTTAAAGAAGGGGGAACTTCAGGTTGCTGGCAAAGAGAGGGAATCAATGCTGTCTAGTCAGTTCAGGGACATTGCCACCATTGTAATGCACAAAACTTTTAATCCCGAGACTAAGCGCCCTTACACTATCAGCATGATTGAACGCCTCATGAGGGATATCCATTTTGCCGTTGATCCAAACAGCACCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAGAAGGTGTCCGTTGAGGATACGCGCTGCCGCTCCTGAGGAGGAAATACCTGTCCTTTTAGAGAAGCTGAACGTATGGAAGGCAACCGTTATTTCTAAAGAAGGGACTTCTGCTCAGTTATCTGTTGTTTTTGAACTAGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCCCACTCCCTTTACGTGGACGGGGATACCCAAGTGGATCAATACAATGATCATGAAGATATGCCTGCACCATTGCCCACAAAAACTCCCGAGTCTGTGCTCGAACTGAATGATAAACTTCAGAAGCAAACAATTTCGAGTGCAACTAAGCCTACTGAGGTACAACAACCAAAGCAAAACAAATGCAACACATGTGACGCATGTTTTGAAGATGCTAAGTTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAAACGAGGCAACTCCCTCCACTCACTGAAGAAGAAATTGCAGCAGATATGGATTTGTTTGAATCAAAATCTGATTTAAAGGATTACTCATTTTGA 1080 0.4343 MSRSLVQPVGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVVQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSSICLEILKKGELQVAGKERESMLSSQFRDIATIVMHKTFNPETKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIRRCPLRIRAAAPEEEIPVLLEKLNVWKATVISKEGTSAQLSVVFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTQVDQYNDHEDMPAPLPTKTPESVLELNDKLQKQTISSATKPTEVQQPKQNKCNTCDACFEDAKLYREHHKSEWHKHNMKRKTRQLPPLTEEEIAADMDLFESKSDLKDYSF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00165 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Vivi4g00165 359 Gene3D Classic Zinc Finger 289 348 - -
Vivi4g00165 359 NCBIfam ribosome assembly factor SBDS 13 232 IPR002140 GO:0042256
Vivi4g00165 359 SUPERFAMILY beta-beta-alpha zinc fingers 293 347 IPR036236 -
Vivi4g00165 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 242 IPR039100 -
Vivi4g00165 359 Gene3D - 174 251 - -
Vivi4g00165 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Vivi4g00165 359 Gene3D - 1 96 IPR036786 -
Vivi4g00165 359 Gene3D - 100 172 IPR037188 -
Vivi4g00165 359 FunFam SBDS, ribosome maturation factor 100 172 - -
Vivi4g00165 359 Pfam SBDS protein, domain II 111 170 IPR018978 GO:0042254
Vivi4g00165 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Vivi4g00165 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Vivi4g00165 359 FunFam SBDS, ribosome maturation factor 3 96 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00165 27 359 C2H2 Transcription Factor Family AT1G43860 56.232 3.27e-136 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi4g00165 SBDS_C 2e-27 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00165 K14574 - gmx:100797497 624.394