Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00134 ATGGACGACATGGAAGACGATGCTAGATACCCATCAAAGGGATACCCTTTGCGACGCAAAAACCCTAATCTTCGTCAAAAACACCCAATTCGTAACTTGCAGTATCATCGCTACGACGATCCTGAAGGCAACAACATCGACGATGAATACGATGATGACGAACATGAAGAATTCGATGATTACAGTATAGATGAAAACGGAATTGAAAATGGGTATGTTGGTAATTTTGAAGGAAACGAAGGGTTCATTAGGAAAAAGAGAAAATTGCGAAGTGGTGGTGGTGGTGGTGGTTCTTCTGTTTCAAACTATGAATTGGTTCCTCGTGGAAAATTCGGTTACATTAATCGCGGCGGTGGCGGTGGTGGTTCTTCGGGTTCTGAGGAATGGACAGAACATGCGACGTTTGTGTTGTTGGAGATTTGGGGTGAAAAGTTTCTTCAAATTGGGAGAAACAGTTTGAGATCAGAGGAATGGCATGAAGTATCTGAGAAAGTTTCGGAAGAGTTGAAAGTCGAAAAGGATGTTGCGGAGTGTAGGAGTGTATTGGATAAGGTGAAAAGAAGGTACAAGAAAGAGAAGAGTAGAATGGATGAAATGGGTTTGGGTGTGAATTCGTGCAAGTGGCCGTTTTTCAAGAGGATGGATATGTTGATGTCTTCGTCTGCGAGACAAGAGTATGGACTTGCTTGTGGTGTTGATTCGGGGGAGTATGTGTTTATGAATACGAGGGTTTATTTGAATAGGTCGAATGGTTTTGATGAAATGAGGGATAGTCCTGGTGAGTCCGAGGCTTCTGAGGATGATTATGAAGGCGATGATTTCGACGGCGATGATGATGATGAGGAGGAAGATGAGATGGATAAGGAAGAGGAGGAGGCTTCATATAGGGTGTTGGCTGATTCTATTCAGAAGTTTGGGAAGATATATGAGAAGATTGAGAATACGAAGAGGCAACAGATGATGGAGTTGGAGAAGATGAGGGTGGATTTTAATAGGGAATTGGAGTTGCAGAAGAAGCAGATTTTGGAAAGGGCGCAGGATGAAATATCGAAAATACAAGTAGGAGACGATGGTGACGATGATGATGATGATGATGAGGACACCGATACTTCTGCAGATAATCTCAGTGAATAA 1134 0.4268 MDDMEDDARYPSKGYPLRRKNPNLRQKHPIRNLQYHRYDDPEGNNIDDEYDDDEHEEFDDYSIDENGIENGYVGNFEGNEGFIRKKRKLRSGGGGGGSSVSNYELVPRGKFGYINRGGGGGGSSGSEEWTEHATFVLLEIWGEKFLQIGRNSLRSEEWHEVSEKVSEELKVEKDVAECRSVLDKVKRRYKKEKSRMDEMGLGVNSCKWPFFKRMDMLMSSSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESEASEDDYEGDDFDGDDDDEEEDEMDKEEEEASYRVLADSIQKFGKIYEKIENTKRQQMMELEKMRVDFNRELELQKKQILERAQDEISKIQVGDDGDDDDDDDEDTDTSADNLSE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00134 377 MobiDBLite consensus disorder prediction 345 377 - -
Vivi4g00134 377 MobiDBLite consensus disorder prediction 1 54 - -
Vivi4g00134 377 MobiDBLite consensus disorder prediction 354 377 - -
Vivi4g00134 377 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 103 354 IPR044823 -
Vivi4g00134 377 MobiDBLite consensus disorder prediction 260 290 - -
Vivi4g00134 377 Coils Coil 309 351 - -
Vivi4g00134 377 MobiDBLite consensus disorder prediction 250 295 - -
Vivi4g00134 377 Pfam Myb/SANT-like DNA-binding domain 127 216 IPR044822 -
Vivi4g00134 377 Gene3D - 129 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00134 Vivi-Chr4 2311653 2313199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00134 257 353 Trihelix Transcription Factor Family AT3G14180 38.235 1.65e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi4g00134 Myb_DNA-bind_4 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00134 - - ccaj:109813475 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00134 4 2311653 2313199 Vivi4g00134 4 2311653 2313199 ECH