Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00131 ATGCCAACACGAACAACCGGAGCGATCGCACAAGACTGGGAGCCAGTCGTCCTCCACAAATCAAAACCCAAGGCACAAGATCTCCGCAACCCGAAAGCGGTGAACCAAGCCTTCCGAACCGGAGCAGAAGTCCAGACGCTCAAGAAATCAACCGCTGGTTTGAACAAGAAAACCGCCGGTCCGGTTGTGAACGCGAGGAAGCTAGACGAAGCGGCTGAACCGGCGGCGTTGGAGCGGGTTGGCGGGGAAGTGAGACAGATGATACAGAAAGCGCGTTTGGATAAGAAGATTAGTCAAGCTGAGCTGGCGAAACAGATTAATGAGAGGGTTCAGGTTGTGCAGGAGTATGAGAATGGGAAAGCGGTTCCTAATCAGCTTGTTTTGGGGAAAATGGAGAGGGTTCTGGGTGTTAAGCTTAGGGGTAAAATTGGAAAATGA 438 0.5183 MPTRTTGAIAQDWEPVVLHKSKPKAQDLRNPKAVNQAFRTGAEVQTLKKSTAGLNKKTAGPVVNARKLDEAAEPAALERVGGEVRQMIQKARLDKKISQAELAKQINERVQVVQEYENGKAVPNQLVLGKMERVLGVKLRGKIGK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00131 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Vivi4g00131 145 FunFam Multiprotein bridging factor 1 72 145 - -
Vivi4g00131 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Vivi4g00131 145 CDD HTH_XRE 86 139 IPR001387 -
Vivi4g00131 145 SMART mbf_short4 87 142 IPR001387 -
Vivi4g00131 145 SUPERFAMILY lambda repressor-like DNA-binding domains 84 139 IPR010982 GO:0003677
Vivi4g00131 145 Coils Coil 88 108 - -
Vivi4g00131 145 Gene3D - 72 145 IPR010982 GO:0003677
Vivi4g00131 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 142 - -
Vivi4g00131 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00131 Vivi-Chr4 2289423 2290129 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vivi4g00131 MBF1 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00131 K03627 - qsa:O6P43_004045 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00131 4 2289423 2290129 Vivi4g00131 4 2289423 2290129 ECH