Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00125 ATGAAAAATATTCCATCTATAAAGTTTAAAAAACTTTTCATCAATGGAGAATTTGTAGACTCAATTTCAGGAAAAACTTTTGAAACTGTTGATCCAAGAACAGAAGAAGTGATTACAGAAATTGCTGAAGCTACCAAAGAAGATGTTGATATTGCTGTCAAAGCTGCACGCCATGCGTTCGATAATGGTCCGTGGCCACGCATGCCTGGTGCTGAGAGAGCAAAGATTATGGTGAAATGGGCGACGCTGATCGAACAAAACATAGAAGAAGTTGCAGCGTTGGATACGATTGATGGAGGGAAGTTGTATAGTTGGTGTAAGGATGTTGATGTACCTGAAGCGGCTAATGTCTTGCGATACTATGCTGGTGCTGCTGATAAGATTCATGGAGAAGTGTTCAAAACTTCGAGGAATCTTCATTTGTATACTTTGATGGAACCTATTGGTGTTGTTGGACATATTATACCTTGGAATTTTCCGACTGGTATGTTCTTTGTTAAAGTTGCTCCTTCTTTGGCTGCTGGTTGTACTATGGTTCTTAAACCGGCTGAACAAACACCTCTCTCTGCTTTGTTTTACGCTCATCTCGCTAAAGAGGCTGGAATTCCGGATGGAGTACTCAATGTAGTACCTGGATTTGGCGCAACTGCAGGAGCTGCAATTAGCTCACATATGGACATTGATGCAGTCAGTTTTACTGGTTCAACCGAAACAGGTCGTCGCGTAATGCAGGCGGCCGCGTTGAGCAATCTGAAGCCGGTGTCGCTTGAGTTAGGAGGCAAGTCACCTGTCATAGTTTTTGATGATGCTGATGTAGATAAAGCTGTTGATCTTGCTCTATTTGGAATACTTCATAATAAGGGTGAAGTGTGCGTAGCATTCTCAAGAGTTTTTGTTCAAGAGGGAATTTATGATGAGTTTGAGAAGAAAGTGGTGGAAAAGGTGAAAAATTGGGTAGTTGGTGACCCTTTTGATCCTCAAGTTCAACAAGGACCCCAAACTAGTAAAGTGCAATTTGATAAAATTCTTTCCTATATTGAGCATGGAAAGAATGAAGGAGCCACACTATTAACTGGTGGTAGGAAAGTGGGAAACAAAGGATACTACATTGAGCCTACTATTTTTACCAATGTCAAGGATGATATGCTAATAGCACAAGATGAAATATTTGGACCTGTTATGACACTTTCTAAGTTCAAGACCATTGATGAAGCAATTAAGAAGGCCAACAATACAAAATATGGCCTAGCAGCAGGGATTGTGACTCAAAACTTGGACATTGCCAATACTGTCTCAAGGTCAATTCGTGCAGGCATCATTTGGATCAATTGCTTCTTTGCCTTTGATATTGACTGCCCTTTTGGAGGGTATAAAATGAGTGGATTTGGAAGAGATTATGGATTGGAAGCACTTCACAAATATCTTCAAGTCAAATCTGTTGCAACTCCTATTTACAATTCTCCATGGCTTTGA 1473 0.4046 MKNIPSIKFKKLFINGEFVDSISGKTFETVDPRTEEVITEIAEATKEDVDIAVKAARHAFDNGPWPRMPGAERAKIMVKWATLIEQNIEEVAALDTIDGGKLYSWCKDVDVPEAANVLRYYAGAADKIHGEVFKTSRNLHLYTLMEPIGVVGHIIPWNFPTGMFFVKVAPSLAAGCTMVLKPAEQTPLSALFYAHLAKEAGIPDGVLNVVPGFGATAGAAISSHMDIDAVSFTGSTETGRRVMQAAALSNLKPVSLELGGKSPVIVFDDADVDKAVDLALFGILHNKGEVCVAFSRVFVQEGIYDEFEKKVVEKVKNWVVGDPFDPQVQQGPQTSKVQFDKILSYIEHGKNEGATLLTGGRKVGNKGYYIEPTIFTNVKDDMLIAQDEIFGPVMTLSKFKTIDEAIKKANNTKYGLAAGIVTQNLDIANTVSRSIRAGIIWINCFFAFDIDCPFGGYKMSGFGRDYGLEALHKYLQVKSVATPIYNSPWL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00125 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 260 449 IPR016163 GO:0016620
Vivi4g00125 490 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 256 263 IPR029510 GO:0016491
Vivi4g00125 490 Pfam Aldehyde dehydrogenase family 19 480 IPR015590 GO:0016491
Vivi4g00125 490 FunFam Aldehyde dehydrogenase, putative 452 478 - -
Vivi4g00125 490 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 284 295 IPR016160 GO:0016491
Vivi4g00125 490 FunFam Aldehyde dehydrogenase3 260 449 - -
Vivi4g00125 490 SUPERFAMILY ALDH-like 6 486 IPR016161 GO:0016491
Vivi4g00125 490 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 14 279 - -
Vivi4g00125 490 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 5 481 - -
Vivi4g00125 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 14 478 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00125 Vivi-Chr4 2172065 2175154 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00125 4 490 Aldehyde Dehydrogenase Gene Family AT3G24503 70.082 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00125 K12355 - gmx:100784449 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06352 5 170036997 170040878 Vivi4g00125 4 2172065 2175154 PCT