Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00118 ATGGGGATGGAGCAAAACAACATGATCGCACCGTTCATTATGAAGACATATCACATGGTTAACGAACCAAACACCGATAACCTTATCAAGTGGGGCCCACCTAACAACAGTTTCATCGTCCTCGACCCCCTCGAATTCTCTCACTCCCTTCTCCCTCTTTTCTTCAAACACAACAACTTCTCTAGCTTCGTTCGTCAACTCAACACCTACGGTTTCAGAAAAGTTGATCCGGATCGTTGGGAATTTGCGAATGAGTGGTTTCTAAGAGGACAAAAGCACTTATTGAAGAACATAGTTAGAAAAAAGCACGTTGGTGGAGTTGGAAATGGAAGGAACAATAATAATAGTAATAATAACTATTATTCTAACGAAGTGAAGTTTGAGGATTTTGAAGAAGATGAAGCTATGGTGACAGAAATATTGAAGCTGAAAGAAGAACAAAGAAATTTAGATGAAGAGCTTCAAGGGATGAACAAGAGATTAGAAACAACAGAGAAACGACCACAACAAATGATGGCTTTTCTTTGCAATGTCGTTGAAGATCCTCAGATTCTGTCTAGAATACTCAATCAGAGAGAGAAGCAGATAGTTCTTGATAAGAAAAAAAGACGGTTGATATCTCCGGTGACGACGACGGTGCCGGTGGCGACTACCTCGACTTCCTCAGACTCGTCTGGCATGGCGGTTGGGAGTTTTGTTAAGACGGAGTTTGAGGAAGACGAGGTAACCGTTGCTAATAATATGATGTCGTCGTCGCCGGAGACGGGTTTTGAAATTGATTATTTCCACCGTGCGCCGCCGTTGGGAGTGACGCCGGCGGTGGGAGGTTGGTGGGGTCAGACGCAGATTGGACAAATGGGGTATGGGTATGATTGCAAAGTTTCTCAGACGCCGTTGACGGAAGTGTCTCCGGCGGCACCGTTTATGGGGGGTGTGAATAGTGGCGATGGTAAAATGGGGGGTGTGGAAATTTTCAGTGAAATAGCGGCGGAGAATAGTTCGTTGCCACCTTATCCCTTTTCTTTGTTGGATGGTGGCTTTTAG 1044 0.4473 MGMEQNNMIAPFIMKTYHMVNEPNTDNLIKWGPPNNSFIVLDPLEFSHSLLPLFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRKKHVGGVGNGRNNNNSNNNYYSNEVKFEDFEEDEAMVTEILKLKEEQRNLDEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNQREKQIVLDKKKRRLISPVTTTVPVATTSTSSDSSGMAVGSFVKTEFEEDEVTVANNMMSSSPETGFEIDYFHRAPPLGVTPAVGGWWGQTQIGQMGYGYDCKVSQTPLTEVSPAAPFMGGVNSGDGKMGGVEIFSEIAAENSSLPPYPFSLLDGGF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00118 347 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 229 IPR027725 -
Vivi4g00118 347 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi4g00118 347 FunFam Heat stress transcription factor B-4 4 102 - -
Vivi4g00118 347 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi4g00118 347 Coils Coil 140 167 - -
Vivi4g00118 347 Gene3D - 4 102 IPR036388 -
Vivi4g00118 347 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Vivi4g00118 347 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi4g00118 347 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi4g00118 347 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi4g00118 347 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00118 Vivi-Chr4 1922731 1924232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00118 8 347 HSF AT3G24520 41.408 1.94e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi4g00118 HSF_DNA-bind 3.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00118 K09419 - gmx:100794896 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00118 4 1922731 1924232 Vivi4g00118 4 1922731 1924232 ECH