Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00089 ATGGTTGATGTTCTGAATGTGAATGTGGTTCATCATATAGTTGGATATATTCTGAATTTCTTACCTAAAGGGGCTCGCTCTCTTCTTGTGCAGCCAATATTACAAGTTTCTATGGAGAGTGCTACCAATTCGCAAACACCGGCGGGATTTATTCGGCTGGTCTCGACCACGAGATATGCATTTAACGTCAAAGGCAGAGCCTGGATTGCAGCTGTGGCTAACAAGCTTAGAGAAATGGGTTATCACAATGAGAAAGAATGGTATTTTTTCTCTCAGGGGGGTCGAAAATACTCGAACAGTTCCCGGCCTAACCGGGTTGCCGGAAGTGGTTACTGGAAGGCTACCGGAGCTGATAAACCAACTGGGAAAGTGAAACCAATGGGGATACAAAAAGCACTGGTTTTCTATGCCGGTAAAGCCCCCAAAGGAGTGAAAACTAATTGGATTATGCATGAATATCGTCTTGCCAACGTTGATAGGCCCGCCAGCAAGAAAAATAATTTAAGGGGAACTCTTGTCCATCAAGAAAATGCTGAACTCCATAAAAAAATGGACTTCATTCAGAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGTGGCATTGAATCTTTCATGCACTATCAGTGGATATGATTTACATGCGCCGATCAGTCTTCAGCTAAGGCAACCACAGGCTCAATACAGTGAACCCGCAACCATGAAATTATGGTATTCCCTCGAACTAATAATATATCGCATATAG 771 0.4241 MVDVLNVNVVHHIVGYILNFLPKGARSLLVQPILQVSMESATNSQTPAGFIRLVSTTRYAFNVKGRAWIAAVANKLREMGYHNEKEWYFFSQGGRKYSNSSRPNRVAGSGYWKATGADKPTGKVKPMGIQKALVFYAGKAPKGVKTNWIMHEYRLANVDRPASKKNNLRGTLVHQENAELHKKMDFIQKENAELQKKVYEARSTNEENVALNLSCTISGYDLHAPISLQLRQPQAQYSEPATMKLWYSLELIIYRI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00089 256 Coils Coil 177 204 - -
Vivi4g00089 256 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 81 167 - -
Vivi4g00089 256 Pfam Cofactor assembly of complex C subunit B, CCB2/CCB4 19 76 IPR021325 -
Vivi4g00089 256 Pfam No apical meristem (NAM) protein 76 155 IPR003441 GO:0003677|GO:0006355
Vivi4g00089 256 SUPERFAMILY NAC domain 76 157 IPR036093 GO:0003677|GO:0006355
Vivi4g00089 256 ProSiteProfiles NAC domain profile. 21 176 IPR003441 GO:0003677|GO:0006355
Vivi4g00089 256 Gene3D NAC domain 45 201 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00089 Vivi-Chr4 918454 920368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00089 75 169 NAC Transcription Factor Family AT5G08790 77.320 3.00e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi4g00089 NAM 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00089 - - vvo:131594633 518.85