Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00084 ATGGAATCTAAAAAAGAGGGGGAGGTGAGGAAATCAAAAGAGGGAGGTTCAATAAGTATAATTTTGAGATATAGTGATTGGATTGATGTTGTTTTAATGTTGATGGGTGGTTTGGGAGCAATTGGAGATGGAATGTCAACAAATGTTTTGCTTCTCTTTGCTAGCCGTATTATGAATAGCTTAGGTTATGCTAATAATAATAATAGTGATACTAACTCCATGAATGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTGACAACTATGGTTGTGGCTTTTTTAGAAGGATATTGTTGGAGCAAAACAAGTGAAAGGCAAGTGTTGAGAATTAGGTACAAATATTTGGAAGCTGTCCTTAAACAAGAAGTTGGTTTTTTTGATTCACAAGAAACAAATACTTCTGAAATCATTAATAGCATATCAAAGGACACTAATCTAATCCAAGAAGTCCTAAGTGAAAAGGTTCCCTTATTTTTGATGCAATCATCATCATTCATATCAGGGATAGCATTTGCAACATACTTTTCATGGAGATTAGCATTAGTAGCATTTCCAACACTTCTCTTACTCATAATCCCTGGCATGATATATGGAAAATACCTAATCTACCTATCAAAATCATCAATGAAAGAGTATGGAAAAGCAAATGCAATTGTTGAGCAAGCATTAAGCTCAATAAAAACAGTGTATTCATTCACAGCTGAAAAGAGAACAATGGAGAAATATTCAGAAATATTAGATAGAACTTCAAAGCTTGGAATAAAACAAGGCATTGCTAAGGGTCTTGCTGTTGGAAGCATTGGTTTGTCTTTTGCAATTTGGGGGTTTCTTGCTTGGTATGGAAGTCATTTGGTTATGTATAAAGGAGAGAGTGGTGGAAGAATTTATGCTGCTGGAATTTGCTTCATTATGAGTGGATTATCATTGGGAGTGGTACTTCCAGATTTGAAATACTTCACAGAAGTATCAATTGCAGCATCAAGAATATTTTCAATGATTGACAGAACACCAGAAATTGACAGTGAAGACACAACAAAAGGAATCACATTACAAACAATCAACGGAAACTTAAATTTCGAACACGTAAAATTCACGTACCCTACGCGTCAAGAAACCATTGTGCTTTATGATTTCAATCTTCAAATCGAAGCGGGAAAAACTGTTGCGTTAGTTGGTGCGAGCGGAAGTGGTAAATCGACCGTAATAGCATTGGTTCAAAGATTCTATGATGCCAATGAAGGTGTTGTTAAGGTTGATGGTTTTGATATAAAGAGTTTGCAATTGAAATGGTTGAGAAGTAAAATGGGACTAGTGAGTCAAGAACATGCCATGTTCGGGACTTCGATTAAGGAGAATATTATGTTCGGGAAAAATGATGCGACTGTTGATGAGATTGTTGCTGCTGCCACGGCCGCTAATGCTCATAATTTCATTAGACAGCTTCCCGATGGTTATGAAACCAAAATTGGAGAGAGGGGTGCACTTCTATCTGGAGGACAAAAGCAAAGAATAGCTATTGCAAGAGCTATCATAAAAAATCCAGTGATTCTTCTACTTGATGAAGCTACTAGTGCACTTGATTCGGAATCCGAATTATTGGTACAAAATGCTCTTGATCAAGCTTCTTTGGGAAGAACTACTTTGGTTGTTGCACACAAGCTATCAACAATCAGAAATGCAGACCTAATAGCAGTTGTAAGTAATGGTTGCATCATCGAAACCGGCACGCACAATGAACTCATCAACACTCCGAATGGCCATTATGCTAAATTAGCAAAATTACAATCACAATTAAGCATTAATGATGATCAAGATCAAATTCAAGAACAACAAACCATTCTTCTCTCTGCAGCAAGAACTAGTGCAGGTAGATCAAGCACCGCAAAATCGAGTCCTGCCATAAACTTTCCGAAATCGCCGTTACCTAATGATGTTAATGCAATCACCATATCTAAAATCTCTCATTCATCGCCGTCATTTTCGAGGTTACTTTTCTTGAATTCGCCCGAATGGAAACAAGGACTCATTGGAACACTTTCGGCTATCGCCTTTGGTTCGATTCAACCTTTGTATGCGTTAACAATCGGTGGCATGATTTCGGCTTTTTTCGCTAAAAGTCATCAAGAAATGAAACACAGAATCATGAACTATTCGTTGATTTTCACTTGTCTATCGGTTGCTTCGGTTACACTCAATCTCATACAACACTACAATTTTGCATATATGGGAGCAAAGTTAACAAAAAGGATAAGATTGTGTATGTTGGAGAAAATCTTAACCTTTGAAACCGCTTGGTTCGATGAAGAAAAAAATTCTAGCGGATCATTGTGTTCGAGGCTAAGCAATGAAGCCTCGATGGTGAAATCGCTCGTTGCTGATAGAGTTTGTTTACTCGTTCAAACGGCTTCGTCCGTCACAATCGCGATGATCATAGGACTTGTCGTAGCTTGGAAGCTAGCTCTTGTTATGATCGCGGTCCAACCGCTAACAATACTTTGTTTTTACACGCGAAAGGTTTTGCTCTCCACGCTTTCGACTAAATTCGTCAAGGCGCAGAACCAAAGCACGCAGATCGCGGTCGAGGCGGTTTATAATCACAGAATTGTAACTTCATTCGGAAGCATCACAAAAGTTTTGAGACTGTTCGACGAGGCGCAAGAGGCGCCGAGGATGGAAGCTAGGAAGAAAGCATGGCTAGCTGGGATTGGTATGGGATCTGCTCAGTGTGTGACTTTTATGTGTTGGGCTTTGGATTTTTGGTATGGTGGAAAGTTGGTTGAAAAGAGAGAAATTTCTTCTGGTGATGTGTTTAAAACATTTTTTGTTTTGGTTAGTACTGGAAAAGTTATAGCTGAAGCTGGTAGCATGACTTCTGATCTTGCGAAAAGTTCGACTGCTGTTGCTTCTGTGTTTGAAATTCTTGATAGACAATCACTTATTCCTAAGGCTGGAGAAGAAAACAATGGAATAAAATTGGAAAAAATGAGTGGAAAAATAGAGTTAAAGAATGTTGATTTTTCATATCCAAGTAGAGCAAAGACACTAATTTTGAACAAGTTTTGCTTGGAAGTGAAGGCAGGAAAAAGTATTGGACTAGTTGGAAAAAGTGGATGTGGAAAATCAACAGTGATTGCATTGATACAAAGATTCTATGATGTTGAAAGAGGATCAGTGAGAATTGATAATGTGGATTTAAGAGAATTAGATATTCATTGGTATAGACAACAAACTTCATTAGTAAGTCAAGAACCTGTCATATATTCTGGTACCATACGTGATAATATTTTGTTTGGTAAACAAGATGCAAATGAAAATGAAGTTGTCGAGGCCGCTAGATCCGCAAACGCGCATGACTTCATATCATCATTGAAAGATGGATATGAAACACAATGTGGAGAAAGAGGAGTTCAATTATCAGGAGGACAAAAGCAAAGAATAGCAATTGCAAGGGCTATAATAAGAAATCCAATCATACTTCTACTTGATGAGGCAACAAGTGCTTTGGATGTACAATCAGAACAAGTTGTGCAAGAAGCACTTGATAGGATTATGGTAGGAAGAACAACCATTGTTGTGGCACATAGGCTTAACACAATCAAAGAGCTTGATTCTATTGCTTATGTGTTAGAGGGTAAGATTGTGGAACAAGGAAGCTATTCTCAGCTTAAGCATAAGAGAGGTGCTTTTTTCAACCTTGCTAATCATCAAATTCAAACTTAG 3729 0.3776 MESKKEGEVRKSKEGGSISIILRYSDWIDVVLMLMGGLGAIGDGMSTNVLLLFASRIMNSLGYANNNNSDTNSMNEVEKCSLYFVYLGLTTMVVAFLEGYCWSKTSERQVLRIRYKYLEAVLKQEVGFFDSQETNTSEIINSISKDTNLIQEVLSEKVPLFLMQSSSFISGIAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSSMKEYGKANAIVEQALSSIKTVYSFTAEKRTMEKYSEILDRTSKLGIKQGIAKGLAVGSIGLSFAIWGFLAWYGSHLVMYKGESGGRIYAAGICFIMSGLSLGVVLPDLKYFTEVSIAASRIFSMIDRTPEIDSEDTTKGITLQTINGNLNFEHVKFTYPTRQETIVLYDFNLQIEAGKTVALVGASGSGKSTVIALVQRFYDANEGVVKVDGFDIKSLQLKWLRSKMGLVSQEHAMFGTSIKENIMFGKNDATVDEIVAAATAANAHNFIRQLPDGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASLGRTTLVVAHKLSTIRNADLIAVVSNGCIIETGTHNELINTPNGHYAKLAKLQSQLSINDDQDQIQEQQTILLSAARTSAGRSSTAKSSPAINFPKSPLPNDVNAITISKISHSSPSFSRLLFLNSPEWKQGLIGTLSAIAFGSIQPLYALTIGGMISAFFAKSHQEMKHRIMNYSLIFTCLSVASVTLNLIQHYNFAYMGAKLTKRIRLCMLEKILTFETAWFDEEKNSSGSLCSRLSNEASMVKSLVADRVCLLVQTASSVTIAMIIGLVVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRMEARKKAWLAGIGMGSAQCVTFMCWALDFWYGGKLVEKREISSGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVASVFEILDRQSLIPKAGEENNGIKLEKMSGKIELKNVDFSYPSRAKTLILNKFCLEVKAGKSIGLVGKSGCGKSTVIALIQRFYDVERGSVRIDNVDLRELDIHWYRQQTSLVSQEPVIYSGTIRDNILFGKQDANENEVVEAARSANAHDFISSLKDGYETQCGERGVQLSGGQKQRIAIARAIIRNPIILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVLEGKIVEQGSYSQLKHKRGAFFNLANHQIQT 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00084 1242 Pfam ABC transporter 380 527 IPR003439 GO:0005524
Vivi4g00084 1242 CDD ABC_MTABC3_MDL1_MDL2 362 598 - -
Vivi4g00084 1242 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Vivi4g00084 1242 Pfam ABC transporter 1021 1169 IPR003439 GO:0005524
Vivi4g00084 1242 SUPERFAMILY ABC transporter transmembrane region 21 343 IPR036640 GO:0005524|GO:0016020
Vivi4g00084 1242 FunFam Putative ABC transporter B family member 8 644 987 - -
Vivi4g00084 1242 Gene3D - 350 599 IPR027417 -
Vivi4g00084 1242 SUPERFAMILY ABC transporter transmembrane region 665 978 IPR036640 GO:0005524|GO:0016020
Vivi4g00084 1242 PANTHER ABC TRANSPORTER B FAMILY 4 690 IPR039421 -
Vivi4g00084 1242 FunFam ABC multidrug transporter SitT 992 1240 - -
Vivi4g00084 1242 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524|GO:0016887
Vivi4g00084 1242 FunFam ABC transporter B family member 1 20 357 - -
Vivi4g00084 1242 Gene3D ABC transporter type 1, transmembrane domain 21 615 IPR036640 GO:0005524|GO:0016020
Vivi4g00084 1242 Gene3D - 1025 1242 IPR027417 -
Vivi4g00084 1242 Pfam ABC transporter transmembrane region 35 291 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g00084 1242 Pfam ABC transporter transmembrane region 679 948 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g00084 1242 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Vivi4g00084 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Vivi4g00084 1242 Gene3D ABC transporter type 1, transmembrane domain 649 1011 IPR036640 GO:0005524|GO:0016020
Vivi4g00084 1242 SMART AAA_5 1029 1221 IPR003593 GO:0016887
Vivi4g00084 1242 SMART AAA_5 387 579 IPR003593 GO:0016887
Vivi4g00084 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 990 1239 IPR027417 -
Vivi4g00084 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g00084 1242 FunFam ABC transporter B family member 4 350 607 - -
Vivi4g00084 1242 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 332 - -
Vivi4g00084 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1238 IPR003439 GO:0005524
Vivi4g00084 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 598 IPR027417 -
Vivi4g00084 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00084 Vivi-Chr4 890814 898101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00084 1 1239 Calmodulin-binding Proteins AT2G36910 41.371 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00084 K05658 - gmx:100801088 1996.09