Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00078 ATGACAATATTATCACTTTATTTTCATGTAGCCACCTTGTTTCTAATCTTGAGCCTTTCAAATTCTGAGTCTCAACAAGAACACTCAATCTTATTGAAAATAAAGCTTCACCTACACAATCCATCTTTTCTCACTCATTGGAACTCATCAAACACCTCTTATTGTTCTTGGCCAGAGATAACATGCACCACTGGTTCTATCACAGGGTTGACTTTGGTCAACTCAACCATAACTCAAACCATACCTTCTTTCATATGTGACCTTAAGAATCTCACACATGTTGACTTCAGCCACAATCTCATTCCTGGTGAGTTTCCTAAAGACTTACTCAAATGTTCCAATCTTGAGTATCTTGATTTGTCTTTGAATAACTTTGTTGGCAAGATTCCTTATGATATCCAAAATTTGGTCCATTTGCAACATCTCAACCTTGGTTCAACCTATTTCGATGGCGAAATTCCTTCGAGTATTGGAAGGCTTAAGGATTTGAGGTTCCTTGACCTTAAATATTGTTTGTTTAATGATACTTTTCCTTTTGAGGTTATTGGTGACATGTTCAACCTTGAGTACTTTGATTTGTCTTTTAATCCTTTGCATCCTTTGAAGCTTCCATTAGGCTTAACCATGTTGAAAAAAATGAGATTTTTTATCATACATGGTTCGAATTTGATAGGCGAAATTCCTGAAAGTGTTGGAGATATGGTTGCATTGGAGAAATTGGATTTATCAGGAAATAATTTGACAGGAAAAATTCCTAGTGGTTTGTTCATGTTGAAGAATTTGAGCATAGTGTATCTTAACAGCAATAATCTCTCTGGAGAGATACCGAATTCGGTTGAAGCGTTGAGTTTGACAACGATTGATCTTGCGAAAAATCTTCTCTCAGGGAAAATACCGACCGATTTTGGAAAGCTTGAAAAGTTATCAGTGTTGCATTTGCACATGAACAATTTTTCAGGAGAGGTTCCGGAGAGCATAAGCCGTCTTGAATCTTTGACAGAATTTCATGTTTTTATGAACAAGTTTTCAGGTACTCTTCCTATGGATTTCGGCCTTAAATCAAAGCTCGAATCTTTTCATATCGCGGTGAACAATTTTAAGGGAAAGTTACCGGAGAATTTGTGCTATCACGGTAAGCTACGATTTTTAACTGTTTATGAAAATAGTTTAAGCGGCGAGTTACCAAAATCACTTGGAAATTGTAGTAGCTTGGTTGATCTGAAAATTTCGAAGAATGAGTTTTTCGGTGAAATTCCTGATGGACTTTGGAGAGCTGAAAATTTGGCTAATTTCATGATAAGTGATAATAAGTTCAATGGTGAACTTCCTCAAAATCTGTCTTCAAATATTTCGATTTTTGATATAAGTTATAATCAGTTTTATGGTGGAATTCCAATTGGAGTAGCTTCTTGGACTAATGTGGTTAAGTTCATAGCTAGCAAGAATTATCTTAATGGAAGTGTTCCTCAAGAGCTAACATCACTTCCTAAGCTCCAAACATTGTTGCTTGATCAAAATCAGCTTAAAGGGTCACTTCCAAATGATATAGTATCATGGAAATCACTAGTGATTCTAAATTTGAGCCAAAATCAACTTATTGGTAAAATTCCAAGTTCATTTGGTCATTTACCTTCGCTTAGTGCTCTCGATCTATCAGAAAATCAATTCTCGGGCGAAATACCTTCTATACCTTCTAGAATCACGAATCTCAATCTTTCGTCGAATTTTTTGACAGGAAAAGTTCCTAGTGATTTTGAAAATTCAGCTTTTGACAGAAGTTTTTTGAACAATTCTGGTTTATGTTCTAATACACCAAAACTTAGTCTTACCCTTTGCGATTTCGGCTTTGAAAAACCAACCAAAACCTCACATTGGTCTATTGGTTTGATTATTGGCCTTATTGTGGTGACTTTCTTGTTGGCTTTGTTTGCATCATTCATGATTATCAAACTTTACAAGAAAGGAAAACACGAATCGGAAAGTTCGTGGAAGCTCATTTCGTTTCAAAGGCTAAGTTTCACAGAACTAGACATACTTTCCTCAATGACAGAACAAAACATCATCGGCAGCGGTGGATTCGGCACGGTGTACCGTGTTCCTGTCAACGGTTTAACCTATGTTGCTGTGAAAAAAATCATGAGTAACAGAAAGTTAAGGCAAAAGCTCGAAACTTCATTTCGCGCGGAAGTTAAAATATTGAGCAATATTCGTCATCGAAACATTGTGAAGTTGCTGTGCTGTATCTCGAATGAGGATTCAATGATGCTTGTGTATGAGTATTTGGAACACAGCAGCCTAGACAAATGGCTGCACAACAAGAATAAGTCATCGAATATGTCTGGTTCCGCGCGACATGTTGTCCTTGATTGGCCGAAGCGATTGCAAATTGCCATTGGAATTGCTCATGGTTTGTGCTATATGCATCATGATTGCTCGCCTCCGATTGTTCATCGCGATATTAAAACAAGCAACATACTTTTGGATTCTCAATTCAATGCAAAAGTTGCCGATTTCGGTCTTGCTAGATCGTTGATGAAGCCCGAAGAATTCAACACCATGTCAGCTGTTATTGGATCTTTTGGTTATATGGCTCCAGAATATGTTCAAACAATTAAAATCAATGAAAAGATTGATGTGTTTAGCTTCGGTGTGATCCTATTGGAGCTAACGACCGGTAAAGAAGCTAACTATGGTGATGAGCATTCATCACTTGTAGAATGGTCATGGAGGCATGTTCTTGTAGGAAGCAATATAGAAGATTTGTTAGACAAAGATTTTGTGGAACCAAGTTGTTTGGATGAAATGTGTTGCATTTTCAAACTTGGGATAATGTGCACTTCTACACTTCCTTCTAGTAGACCTTCCATGAAGGAAGTGTTGCACTTATTGGTTAGAAGTGAAAGAGGGTTTGTGTTTGGAGGTAGGAATGATGTTGGTGGAGAATATGATGTTGTTCCTTTTCTTAAAAATTCTAAATTGAGTAGTAGGAGGATTGATGTTGTTGATAGTGATAGTGACTAG 3021 0.3694 MTILSLYFHVATLFLILSLSNSESQQEHSILLKIKLHLHNPSFLTHWNSSNTSYCSWPEITCTTGSITGLTLVNSTITQTIPSFICDLKNLTHVDFSHNLIPGEFPKDLLKCSNLEYLDLSLNNFVGKIPYDIQNLVHLQHLNLGSTYFDGEIPSSIGRLKDLRFLDLKYCLFNDTFPFEVIGDMFNLEYFDLSFNPLHPLKLPLGLTMLKKMRFFIIHGSNLIGEIPESVGDMVALEKLDLSGNNLTGKIPSGLFMLKNLSIVYLNSNNLSGEIPNSVEALSLTTIDLAKNLLSGKIPTDFGKLEKLSVLHLHMNNFSGEVPESISRLESLTEFHVFMNKFSGTLPMDFGLKSKLESFHIAVNNFKGKLPENLCYHGKLRFLTVYENSLSGELPKSLGNCSSLVDLKISKNEFFGEIPDGLWRAENLANFMISDNKFNGELPQNLSSNISIFDISYNQFYGGIPIGVASWTNVVKFIASKNYLNGSVPQELTSLPKLQTLLLDQNQLKGSLPNDIVSWKSLVILNLSQNQLIGKIPSSFGHLPSLSALDLSENQFSGEIPSIPSRITNLNLSSNFLTGKVPSDFENSAFDRSFLNNSGLCSNTPKLSLTLCDFGFEKPTKTSHWSIGLIIGLIVVTFLLALFASFMIIKLYKKGKHESESSWKLISFQRLSFTELDILSSMTEQNIIGSGGFGTVYRVPVNGLTYVAVKKIMSNRKLRQKLETSFRAEVKILSNIRHRNIVKLLCCISNEDSMMLVYEYLEHSSLDKWLHNKNKSSNMSGSARHVVLDWPKRLQIAIGIAHGLCYMHHDCSPPIVHRDIKTSNILLDSQFNAKVADFGLARSLMKPEEFNTMSAVIGSFGYMAPEYVQTIKINEKIDVFSFGVILLELTTGKEANYGDEHSSLVEWSWRHVLVGSNIEDLLDKDFVEPSCLDEMCCIFKLGIMCTSTLPSSRPSMKEVLHLLVRSERGFVFGGRNDVGGEYDVVPFLKNSKLSSRRIDVVDSDSD 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00078 1006 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 181 280 - -
Vivi4g00078 1006 SMART LRR_typ_2 136 160 IPR003591 -
Vivi4g00078 1006 SMART LRR_typ_2 543 570 IPR003591 -
Vivi4g00078 1006 SMART LRR_typ_2 305 329 IPR003591 -
Vivi4g00078 1006 SMART LRR_typ_2 234 258 IPR003591 -
Vivi4g00078 1006 SMART LRR_typ_2 88 112 IPR003591 -
Vivi4g00078 1006 SMART LRR_typ_2 495 519 IPR003591 -
Vivi4g00078 1006 Gene3D Ribonuclease Inhibitor 23 201 IPR032675 -
Vivi4g00078 1006 FunFam Kinase family with leucine-rich repeat domain-containing protein 761 976 - -
Vivi4g00078 1006 FunFam Kinase family with leucine-rich repeat domain-containing protein 664 760 - -
Vivi4g00078 1006 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vivi4g00078 1006 Pfam Leucine Rich Repeat 237 254 IPR001611 GO:0005515
Vivi4g00078 1006 Gene3D Ribonuclease Inhibitor 202 352 IPR032675 -
Vivi4g00078 1006 ProSiteProfiles Leucine-rich repeat profile. 236 258 IPR001611 GO:0005515
Vivi4g00078 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Vivi4g00078 1006 SUPERFAMILY Protein kinase-like (PK-like) 674 963 IPR011009 -
Vivi4g00078 1006 Pfam Protein kinase domain 684 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00078 1006 FunFam Receptor-like protein kinase HSL1 isoform A 24 175 - -
Vivi4g00078 1006 SMART serkin_6 682 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00078 1006 PRINTS Leucine-rich repeat signature 543 556 - -
Vivi4g00078 1006 PRINTS Leucine-rich repeat signature 237 250 - -
Vivi4g00078 1006 ProSiteProfiles Protein kinase domain profile. 682 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00078 1006 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 258 963 - -
Vivi4g00078 1006 FunFam Leucine-rich repeat receptor-like protein kinase TDR 302 613 - -
Vivi4g00078 1006 Gene3D Ribonuclease Inhibitor 353 613 IPR032675 -
Vivi4g00078 1006 SUPERFAMILY RNI-like 283 616 - -
Vivi4g00078 1006 Gene3D Phosphorylase Kinase; domain 1 653 760 - -
Vivi4g00078 1006 Pfam Leucine rich repeat 518 556 IPR001611 GO:0005515
Vivi4g00078 1006 SUPERFAMILY L domain-like 38 343 - -
Vivi4g00078 1006 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Vivi4g00078 1006 Gene3D Transferase(Phosphotransferase) domain 1 761 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00078 Vivi-Chr4 843275 846616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00078 27 963 Receptor kinase-like Gene Family AT5G25930 49.315 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi4g00078 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00078 - - cam:101515509 1501.49