Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00076 ATGACAAAATCAAAAATGTTCATTCTCCTCTTCATTTTCCTATTCACCTATGCAAATTCTCAATCTCAATCTCAGTTATACAATCATGAACATGAAATCCTATTAAACATAAAAAACCACTTTCAAAATCCATCATTTCTATCTCACTGGACAAAATCAAACACTTCTTCACATTGTTCATGGCCAGAAATTGTTTGTGAAAATGACTCAGTCACTTCACTTTCAATGATCAACACAAACATAACTCAAACACTTCCACCTTTTCTTTGTGACCTCAAAAACCTCACTCACATTGATTTTCAATATAACTACCTTCCTCATGAGTTTCCAAAGTCTCTTTACAATTGCTCCAAGCTTCAATACCTTGATCTCTCGCAGAACTTCTTCGTCGGTAAAATACCGGACGATATCGATCGGTTGGGTCGTCTGGAGTTTCTTAGCCTCGGGGCAAACAACTTTTCAGGTGATGTTCCTAGGAGTATTGGGAAGTTGAAGAATTTGAAAAATCTTCAACTTTATCAGTGTCAGTTAAATGGTACTATTGCTGATGAAATTGGTGATTTGTTTGATCTTGAAACTTTGTTATTGTTCTCTAATGGTATGCTGCCTAGAACAAAATTGCCATCTAGTTTTACCAAGTTGAAAAAATTGAAGATTTTTTATATGTATGACTCTAACTTGTTTGGTGAAATTCCTGAAACAATTGGTGAAATGATGGCTTTGGAGGAATTGGATTTATCAGGAAATTCTTTGAGTGGAAAAATTCCAAATGGGTTGTTCAGTTTGAAAAATTTGAGTATAGTTTATCTGTACAAGAATAATCTTTCTGGAGAGATACCGGATGTGATTGAAGCGTTCGAGTTAACAAACTTGGATCTTTCGATGAATTATCTCACTGGTAAAATACCGGATGGATTTGGAAACCTCGGAAAGCTGAGCAACTTGAGTTTGTTTGTGAATCAATTATCCGGGGAGGTTCCAGAAAGCATCGGTCGGTTGCCGGGTCTGATTGATTTCATGGTTTTTCAGAACAATTTGTCGGGTAATCTTCCTCAAGGATTTGGATGGTTTTCTAAACTTGAAACTTTTCAGATTGGATCTAATAATTTCAAAGGAAAACTACCACAGAATTTGTGTTATCATGGAAGGTTTGTTGGTTTAACTGCTTATGACAATAGTCTAAGCGGCGAGTTACCGAAATCGTTAGGTAGTTGTAGCAGTTTACAAATTCTGAGAGTTGAGAATAATGAGCTTTCTGGTAACATTCCTAATGGTTTATGGACATCTGTGAACTTGACAACACTTATGATAAGTGAGAACAAGTTCACTGGTGAGCTTCCGGGAAGATTGTCGCCGAGTCTTTCCAGACTTTCCGTAAGTTACAATCGGTTTTCGGGTAGAATCCCAAATGGAATTACTTCTTGGAAGAATGTAGTGGTGTTTAATGCTAGTAACAACTTTTTCAATGGAAGTATTCCATCGGAGTTAACATCGCTTCCTCAGCTAACAACTCTTCTTCTCGATAATAACAAACTCACCGGTCGAGTTCCATCGGATATAATATCATGGAAGTCTCTAATAAGTCTAGACTTGAGCCACAATCAACTCTCTGGAGAAATACCAGACGCAATTTGTCGGTTACCATCTCTTAACATGTTGGACTTATCAAAAAACGAAATCTCTGGCCGAATTCCACTTCAACTCACGAGACTCACAAATCTCAATCTTTCCTGTAATTATTTCACAGGGAGGATTCCGAGTGAGTTCGAAAACCCTGTGTATGACAGAAGCTTTCTGAACAATTCTGGTTTATGTGCTGATACATTAGTACTAAACCTTAATTTGTGCAATTCTGGAACTGCAAGGAGAAGAAGTGATTCATCTACGCCTAAGGCTATGATCATAATCTTGGTGGTTGTAGCTTCTTTAACGGTTTTCTTGTGTATGTTCTCGATTATCAGTTTTTACAGAAAAAGAAAGAGAGGACTGAAAAGGACATGGAAGCTAACTTCCTTTCAGAGGCTCAGTTTCACAAAATCAAACATTGTGTTGTCGATGTCAGAAGATAATATCATTGGTAGCGGCGGATTTGGCTCAGTGTATCGCGTTGCTCTTGACGACGGTTTAGGTTATGTTGCAGTGAAAAAGATAAGGGGAAACAGCAGAAAGTTAGACCAGAAGCTTGTGGATTCATTTCTTGCAGAAGTTGAAATACTTAGCAATATTCGGCATAACAACATTGTGAAGTTGATGTGTTGTATCTCAAGTGACGAATCTCTATTACTTGTCTACGAGTATCATGAACATCAGAGCCTTGATAGGTGGCTGCACAAAAAGAATAAGACATCGGTTGTGTCCGGTGCGGTTCATCGTGACATCATCGATTGGCCGAAGAGATTGCATATAGCCATTGGAGCTGCACAAGGTTTGTGCTACATGCATAACGATTGCTCGCCGCCTATTGTTCACCGAGACGTGAAAACAAGTAACATTCTTTTGGATTCTAAATTCAACGCAAAAGTTGCTGATTTCGGTCTCGCCAGGATACTGATCAAGCCTGAAGAACTTGCCACCATGTCAGCTGTGGCTGGCACATTTGGATATATTGCTCCAGAATATGCTCAAACAATTAGAGTCAATGAGAAGATAGATGTTTACAGCTTTGGAGTAGTTCTATTGGAACTGACAACTGGAAAAGAAGCTAATCATGGAGACGAATACTCGTCGCTTGCAGAATGGTCGTGGCGCCATATTCAGATAGGAACCGATATAGAAGAGCTTCTGGACGAAGACGCTGTGGAACCTAGTAACTTGACTGAAATGATCAACATCTTCAAACTCGGGGTTATGTGCACGTCAACGCTGCCAGCTAGCAGACCATCAATGAAGGAAGTCTTGAAGATATTGATCGGCTGCAAGGATCCGCAAGCCAATGCGGAGAAGATTGTCGATATCTATGATGATGCTCCACTTCTTAAGAATTTGAAATGGGAAAAGCAGGTGGAATATTCAGAATAA 3018 0.3903 MTKSKMFILLFIFLFTYANSQSQSQLYNHEHEILLNIKNHFQNPSFLSHWTKSNTSSHCSWPEIVCENDSVTSLSMINTNITQTLPPFLCDLKNLTHIDFQYNYLPHEFPKSLYNCSKLQYLDLSQNFFVGKIPDDIDRLGRLEFLSLGANNFSGDVPRSIGKLKNLKNLQLYQCQLNGTIADEIGDLFDLETLLLFSNGMLPRTKLPSSFTKLKKLKIFYMYDSNLFGEIPETIGEMMALEELDLSGNSLSGKIPNGLFSLKNLSIVYLYKNNLSGEIPDVIEAFELTNLDLSMNYLTGKIPDGFGNLGKLSNLSLFVNQLSGEVPESIGRLPGLIDFMVFQNNLSGNLPQGFGWFSKLETFQIGSNNFKGKLPQNLCYHGRFVGLTAYDNSLSGELPKSLGSCSSLQILRVENNELSGNIPNGLWTSVNLTTLMISENKFTGELPGRLSPSLSRLSVSYNRFSGRIPNGITSWKNVVVFNASNNFFNGSIPSELTSLPQLTTLLLDNNKLTGRVPSDIISWKSLISLDLSHNQLSGEIPDAICRLPSLNMLDLSKNEISGRIPLQLTRLTNLNLSCNYFTGRIPSEFENPVYDRSFLNNSGLCADTLVLNLNLCNSGTARRRSDSSTPKAMIIILVVVASLTVFLCMFSIISFYRKRKRGLKRTWKLTSFQRLSFTKSNIVLSMSEDNIIGSGGFGSVYRVALDDGLGYVAVKKIRGNSRKLDQKLVDSFLAEVEILSNIRHNNIVKLMCCISSDESLLLVYEYHEHQSLDRWLHKKNKTSVVSGAVHRDIIDWPKRLHIAIGAAQGLCYMHNDCSPPIVHRDVKTSNILLDSKFNAKVADFGLARILIKPEELATMSAVAGTFGYIAPEYAQTIRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWSWRHIQIGTDIEELLDEDAVEPSNLTEMINIFKLGVMCTSTLPASRPSMKEVLKILIGCKDPQANAEKIVDIYDDAPLLKNLKWEKQVEYSE 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00076 1005 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 282 964 - -
Vivi4g00076 1005 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Vivi4g00076 1005 Pfam Protein kinase domain 688 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00076 1005 Gene3D Transferase(Phosphotransferase) domain 1 768 989 - -
Vivi4g00076 1005 FunFam Receptor-like protein kinase HSL1 isoform A 27 179 - -
Vivi4g00076 1005 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 184 284 - -
Vivi4g00076 1005 Gene3D Ribonuclease Inhibitor 342 614 IPR032675 -
Vivi4g00076 1005 SMART LRR_typ_2 238 262 IPR003591 -
Vivi4g00076 1005 SMART LRR_typ_2 309 333 IPR003591 -
Vivi4g00076 1005 SMART LRR_typ_2 524 547 IPR003591 -
Vivi4g00076 1005 SMART LRR_typ_2 499 523 IPR003591 -
Vivi4g00076 1005 SMART LRR_typ_2 92 116 IPR003591 -
Vivi4g00076 1005 SMART LRR_typ_2 568 591 IPR003591 -
Vivi4g00076 1005 SMART LRR_typ_2 140 164 IPR003591 -
Vivi4g00076 1005 SUPERFAMILY L domain-like 36 371 - -
Vivi4g00076 1005 Gene3D Phosphorylase Kinase; domain 1 669 766 - -
Vivi4g00076 1005 SUPERFAMILY Protein kinase-like (PK-like) 686 970 IPR011009 -
Vivi4g00076 1005 FunFam Receptor-like protein kinase HSL1 isoform A 292 616 - -
Vivi4g00076 1005 ProSitePatterns Protein kinases ATP-binding region signature. 692 716 IPR017441 GO:0005524
Vivi4g00076 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Vivi4g00076 1005 Gene3D Ribonuclease Inhibitor 204 339 IPR032675 -
Vivi4g00076 1005 Gene3D Ribonuclease Inhibitor 27 203 IPR032675 -
Vivi4g00076 1005 Pfam Leucine rich repeat 523 560 IPR001611 GO:0005515
Vivi4g00076 1005 ProSiteProfiles Protein kinase domain profile. 686 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00076 1005 Pfam Leucine Rich Repeat 241 260 IPR001611 GO:0005515
Vivi4g00076 1005 Pfam Leucine Rich Repeat 118 139 IPR001611 GO:0005515
Vivi4g00076 1005 PRINTS Leucine-rich repeat signature 526 539 - -
Vivi4g00076 1005 PRINTS Leucine-rich repeat signature 547 560 - -
Vivi4g00076 1005 SUPERFAMILY RNI-like 288 590 - -
Vivi4g00076 1005 SMART serkin_6 686 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00076 1005 FunFam Kinase family with leucine-rich repeat domain-containing protein 767 986 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00076 Vivi-Chr4 816179 819723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00076 29 1002 Receptor kinase-like Gene Family AT5G25930 51.368 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi4g00076 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00076 - - gmx:100785907 1404.42