Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00073 ATGTCAAAAAAGATCATATTATCATTTCTTCTTCTTTTTGTGCAAAATCTAAGCACAATACAATGTCATACAAAGGGAATTCGACCAATACATTCAACAAGAAACGGTTTTACAACCAACAATACAACAAGAACAGACTTGTCAGAACAACAGTTCATGAAATGGGTGAGTTTTGTTGGTGCTCTCAAACACACAGTTTTCAAGACTGCAAAAAATAAGCTCTTTGCTTCTTACACTTTGCACGTTGATAAGAATCCATCTTTTGGAGATTTCACTACAATTCAAGATGCCATTGATTCTCTTCCTTCTATCAATCTTGTTAGAGTTGTCATCAAAGTTCATGCAGGAGTTTACACGGAGAAAGTAAACATCCCTCCATTGAAATCTTTCATAAGCATAGAAGGAGATGGAGCAGATGCAACAATTGTTCAATGGGGTGACACTGCTCAAACACCAGGTCCTAGAGGGATTCCAATGGGAACACATGGCTCAGCAACTTTTGCTGTTAATTCACCTTATTTCATTGCCAAGAACATCACATTCCAAAATACATTTCCTGTTCCTGCACCTGGAGCAATTGGAAAACAAGCAGTAGCATTTAGAATTTCAGCAGACACAGCATCTTTCTTAGGATGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATCTTGGTAGACATTACTATAAAGATTGTTATATTGAAGGTTCTGTCGATTTCATCTTCGGCAACGCTCTCTCCCTCTTCGAGGGATGTCACGTGCACGCGATAGCGAGAAATACGGGAGCGCTAACGGCACAAGGAAGGAGTAGTATGTTACAAGACACAGGTTTCTCATTTGTGAACTGTAAGGTCACGGGTTCAGGGGCACTATACCTTGGAAGAGCTTGGGGTCCTTTTTCACGAGTTGTGTTTGCTTATACAAATATGGACAATATCATCATTCCTAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGACCTGGAGCAAGTTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGATGAAGAAGCTAAACCTTTTCTTTCACTTACCTTTATTGATGGGACTGAATGGATCAATTTTTAG 1137 0.394 MSKKIILSFLLLFVQNLSTIQCHTKGIRPIHSTRNGFTTNNTTRTDLSEQQFMKWVSFVGALKHTVFKTAKNKLFASYTLHVDKNPSFGDFTTIQDAIDSLPSINLVRVVIKVHAGVYTEKVNIPPLKSFISIEGDGADATIVQWGDTAQTPGPRGIPMGTHGSATFAVNSPYFIAKNITFQNTFPVPAPGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARNTGALTAQGRSSMLQDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTNMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFLSLTFIDGTEWINF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00073 378 SUPERFAMILY Pectin lyase-like 76 377 IPR011050 -
Vivi4g00073 378 Pfam Pectinesterase 89 372 IPR000070 GO:0030599|GO:0042545
Vivi4g00073 378 FunFam Pectinesterase 76 378 - -
Vivi4g00073 378 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 72 377 - -
Vivi4g00073 378 ProSitePatterns Pectinesterase signature 2. 235 244 IPR033131 -
Vivi4g00073 378 Gene3D - 75 378 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00073 Vivi-Chr4 691891 694982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00073 80 378 Carbohydrate Esterase AT1G05310 46.906 1.12e-99 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00073 K01051 - qsu:112033938 655.981