Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00060 ATGAAAAACCAAACCACATTGTTCCTGTCTTTTCTCATTCTCCATTTTGCTACATCAAAAGCAGGTTTCAGTGTTGGTGGTAGTGTTGGTGTGGGAGTAGGTGTTGGAAGTGGAGTTGTTTGGGTTGGAGGAGGTGCTAATAGCAACCAAAACCAAAACCCAAAAGCCTATGAATCTCCAATATCAAAAAAGGATTCAGCTTTTTCAGCTCTTCAAGCATGGAAATCTGCAATCACTGATGATCCTTTAAAGATTCTAGAATCTTGGGTTGGTTCAAATGTTTGTTCTTACAAAGGAATCTTCTGTGCAAATCCTGAGAATGGAAATGCTGCTGAAGAATCTGATTCACTAGTTGTTGCAGGGATAGATCTAAACCATGCAAATCTTCAAGGAACTCTTGTAAAAGAACTATCTTTACTCACTGATGTGTCCATTCTTCATCTCAACAGTAACAGATTCAGTGGAACAGTGCCTGAAACATTCAAAGATCTTGTTTTTCTACAAGAGTTTGATATAAGCAATAACCACTTTTCAGGTTCTTTTCCTTCGGTTACATTGTATATGCCAAGTTTGATTTACTTGGACATTAGGTTCAACTTTTTCTCTGGCTTATTACCTCAAGAGCTTTTCGACAAGAATCTCGATGCGATATTCGTCAACAACAATCAATTCGAAGGCGAAATTCCTTCGAATTTAGGTAACTCGCCTGCTTCTGTGATTAACTTGGCTAACAATAAGTTGAGTGGAAATATTCCAGCTAGTTTTGGTTTTATGGGATCAAAGATAAAAGAGATTCTATTTCTGAATAATCAGTTAACCGGTTGTATACCAGAAGGAGTTGGACTTTTCACTGAAATGGAAGTTCTTGATGCGAGTTTCAATTCGCTTACGGGTCATTTGCCGGATACATTGTCTTGCTTACAGAATATAGAAGTGCTTAATTTGGCGCATAATCAGCTTTCTGGAGAGTTATCTGATATAGTATGTTCGCTGCGAAGTTTGGCTAATTTAACTGTTGCGTATAATTTCTTTTCTGGGTTTAGTCAACAATGTTCTAAGCTGCCTTTTAGGAATGTTGGTTTCGATTTTTCGCTTAATTGTATTCCTGGGAGGGATATGCAGAGACCACATCCTGAGTGTTCTATCATCCCAGGTGGTAGCTTAAGTTGTTTCAGAATTCCAACACCAAAGCCTCTTATTTGTGGTTCTATGTTTGTAAGTGATTCTGAGAACACTGATTCTACCTCGGAATCACCTTCGCAAACACAATCTCCTTAA 1278 0.3818 MKNQTTLFLSFLILHFATSKAGFSVGGSVGVGVGVGSGVVWVGGGANSNQNQNPKAYESPISKKDSAFSALQAWKSAITDDPLKILESWVGSNVCSYKGIFCANPENGNAAEESDSLVVAGIDLNHANLQGTLVKELSLLTDVSILHLNSNRFSGTVPETFKDLVFLQEFDISNNHFSGSFPSVTLYMPSLIYLDIRFNFFSGLLPQELFDKNLDAIFVNNNQFEGEIPSNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMEVLDASFNSLTGHLPDTLSCLQNIEVLNLAHNQLSGELSDIVCSLRSLANLTVAYNFFSGFSQQCSKLPFRNVGFDFSLNCIPGRDMQRPHPECSIIPGGSLSCFRIPTPKPLICGSMFVSDSENTDSTSESPSQTQSP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00060 425 Gene3D Ribonuclease Inhibitor 236 358 IPR032675 -
Vivi4g00060 425 Pfam Leucine rich repeat N-terminal domain 66 102 IPR013210 -
Vivi4g00060 425 SUPERFAMILY L domain-like 70 355 - -
Vivi4g00060 425 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 55 417 - -
Vivi4g00060 425 FunFam Leucine-rich repeat extensin-like protein 1 68 234 - -
Vivi4g00060 425 Pfam Leucine rich repeat 144 199 IPR001611 GO:0005515
Vivi4g00060 425 Gene3D Ribonuclease Inhibitor 65 235 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00060 Vivi-Chr4 598812 600483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00060 57 392 Leucine-rich Repeat extension Gene Families AT3G24480 47.953 3.55e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00060 - - psat:127117995 718.383