Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00041 ATGGCACCAAAACTCTTCATCACTTCTTTAACCATCTTCTTTTTTTCTATTCTCATCAAAATTTCATCTTCTATTTCAGATATAGATTCTCTCCTCAAATTGAAAACCTCTTTTCAAAACACCGACGCTGCGTTATCGTCATGGAACACATCTATCCCTCCGTGTGATGGTGATAATGCTAATTGGTCAGGTGTTCTTTGCTATAAAGGACATATTTGGGGATTCAAACTCGAAAACATGAACCTTAAAGGCACCATCGACGTTAATGCAATCAAGGATTTACCTTATATCAGAACCATTAGTTTCATGAACAACCAATTCGATTCACCCTGGCCCAACCTCAACAAACTCTCTGGTCTCAAGACCCTTTTTCTTTCCAATAATAAATTCTCTGGCGACATTCCCGATGACACGTTTAAGAGCATGCAATGGTTGAAGAAAATTCATCTGTCTAACAACCAGTTCACTGGTCCTATTCCATCTTCCCTTGCTTCGTTGCCGAGGCTCATATCCTTGAAGTTGGATGGAAATAAATTCAGTGGTCCTATTCCTCAATTTCAACACACTTTTAAATCATTCAGTGTAGCAAATAATCAATTAGAGGGTCAAATACCTGCCACCCTTAGCAAGATTCCAGCTTCATCTTTTTCTGGTAATGAAAAGCTGTGTGGAGCCCCTTTAGGAGCATGCTCATCCCAAAAGAAACCGCCATCACCATCATCATCATCTTCATCATCACCATCATCATCCATAAATGTAAACAGTATTGTGGTTGTGGTTCTTGTTAGTCTTGCATTGCTTGTGATTGCAGCAGTAATATTATTTTTCCTTATTAGAAGAAGAAAAAAAAGTGAACAAGGAGCAATAGCAGATGGAGGAGGAGTAGGTTTAATTGGCAACACCAGCAGCAACAACACTGTGGATAGTAGTAGTATTCAAAAGAGAGGACCATCATCATCAAATAATATTAATATTTCAGATGATCCGGGAGGTTCAATACGGTCACGCGGAAGCAGCAACCACAGTAGCAGAAGAGAAGAAATGAAGTTATCTTTTGTTAGGGAAGAAGCATCAGAACAATTTGATTTACAAGATCTTTTGAGAGCCTCTGCTGAGATATTAGGAAGTGGCTGTCACAGTTCATCTTACAAGGCTGCGCTATTGACCGGCTCCACCGTTGTTGTAAAAAGATTCAAAGAGATGAACAATGTTGGTAGGGAAGAGTTTACAGAACACATGAGAAGATTAGGAAGGTTGAATCATCCTAATCTCATTTCTCTCTTAGCATACTACTACAAAAGAGACGAAAAACTCTTCATTACCAACTTCATTCACAATGGCAGCTTAGCCGTCCGTCTTCACGGATACCAAGCTATAGGACAAGTAAGCCTTGATTGGCCGAAGAGGTTGAAGATTGTGAAAGGTGTAGCACAAGGTATTGAATATTTGTACAAAGAGATGCCGAACTTGATTGCGCCTCACGGTCAACTTAAATCTTCAAATGTTCTATTGAGTGAGTCTATGGAGCCTATACTAACAGACTATGGATTAATACCTGTGATAAACCAAGATATTGCTCATGAAATAATGGTTGCATACAAGTCACCCGAGTATTTGCAGCATGGGAGGATCACTAAGAAGACTGATGTATGGAGTCTTGGTTTACTCACTTTGGAAATTCTAACTGGAAAATACCCTGCTAATTTTATACAACAAAGCGAGGTGAGTTTGGCGAATTGGGTTGATTCAGTTGTGCAAGAAGAGTGGCCTAGTCAAGTGTTTGATAACGATATGGAGTATAGTAGAAATAGCGAGGGAGAGATAGTTAAGCTTTTGAAGATCGCATTGGCTTGTTGTGATATGGATGTTGATAAGAGATTAGATTTAAAAGAAGCTGTTGACAGAATTCAAGAGGTACAAACACAAGAAGATATTAATGAGGAGGATCTGTAG 1953 0.3917 MAPKLFITSLTIFFFSILIKISSSISDIDSLLKLKTSFQNTDAALSSWNTSIPPCDGDNANWSGVLCYKGHIWGFKLENMNLKGTIDVNAIKDLPYIRTISFMNNQFDSPWPNLNKLSGLKTLFLSNNKFSGDIPDDTFKSMQWLKKIHLSNNQFTGPIPSSLASLPRLISLKLDGNKFSGPIPQFQHTFKSFSVANNQLEGQIPATLSKIPASSFSGNEKLCGAPLGACSSQKKPPSPSSSSSSSPSSSINVNSIVVVVLVSLALLVIAAVILFFLIRRRKKSEQGAIADGGGVGLIGNTSSNNTVDSSSIQKRGPSSSNNINISDDPGGSIRSRGSSNHSSRREEMKLSFVREEASEQFDLQDLLRASAEILGSGCHSSSYKAALLTGSTVVVKRFKEMNNVGREEFTEHMRRLGRLNHPNLISLLAYYYKRDEKLFITNFIHNGSLAVRLHGYQAIGQVSLDWPKRLKIVKGVAQGIEYLYKEMPNLIAPHGQLKSSNVLLSESMEPILTDYGLIPVINQDIAHEIMVAYKSPEYLQHGRITKKTDVWSLGLLTLEILTGKYPANFIQQSEVSLANWVDSVVQEEWPSQVFDNDMEYSRNSEGEIVKLLKIALACCDMDVDKRLDLKEAVDRIQEVQTQEDINEEDL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00041 650 Gene3D Ribonuclease Inhibitor 191 230 IPR032675 -
Vivi4g00041 650 MobiDBLite consensus disorder prediction 227 250 - -
Vivi4g00041 650 MobiDBLite consensus disorder prediction 300 338 - -
Vivi4g00041 650 Gene3D Ribonuclease Inhibitor 25 190 IPR032675 -
Vivi4g00041 650 MobiDBLite consensus disorder prediction 233 250 - -
Vivi4g00041 650 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Vivi4g00041 650 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Vivi4g00041 650 MobiDBLite consensus disorder prediction 300 349 - -
Vivi4g00041 650 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 88 183 - -
Vivi4g00041 650 Pfam Protein kinase domain 371 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00041 650 FunFam pollen receptor-like kinase 1 336 443 - -
Vivi4g00041 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 643 IPR046959 -
Vivi4g00041 650 SUPERFAMILY L domain-like 37 226 - -
Vivi4g00041 650 Gene3D Phosphorylase Kinase; domain 1 333 443 - -
Vivi4g00041 650 ProSiteProfiles Protein kinase domain profile. 368 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00041 650 SUPERFAMILY Protein kinase-like (PK-like) 372 640 IPR011009 -
Vivi4g00041 650 Gene3D Transferase(Phosphotransferase) domain 1 444 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00041 Vivi-Chr4 300397 303567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00041 12 648 Receptor kinase-like Gene Family AT5G35390 48.362 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi4g00041 Pkinase 1.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00041 - - gmx:100785189 749.199