Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00040 ATGTCTCGGTTGAATTCAGAAAAGAAACTCGGTGCAGGCCGTGTCGTTGCTGTTGCTATTGAGAATAACAAAACAAGCCAACATGCTGCTAAATGGGCTGTTGAAAATCTTCTTCCTAAAGATCAATGCCTCTATCTCATTCATGTTAAACAAAAAATTAATTCCTCCTCTTCCGTCTCATCGTCATCATCTAATAGCGATATAAACGACGATACCTTTGATAGCGAATCAAAAGATCTTTTTGATTCCTTCCGCGTTTTCTGCAATAGAAAAAGCATACAATGCAGAGAAGTGTTGTTGGAGGATGCAGATATATCAAAGGCATTAATAGATTGCATTTCAACTCATTGCATTGAGCTTCTTGTGTTAGGAGCATCATCAAGGGGTGGTATTGTTAGAAGATTTAGGACAACGGATGTTCCTACCACTGTTTCAAAAGCTGCACCAACATTCTGCACTGTGTATATAATATCGAAAGGAAAGATTTCGACTGTTAGATCTGCGACAGCTCCAATTCCAAAACCACCCGCGCCTATGTCGGCGCCTATGATTGCGCCACCAACACCGTCACGTAGTCAACAGTTTCAACAGCAATATGCAATGCCGACTCGAAGTCCCGAAAGATCCGACCCTCAGTTGAGCAGAAACTACCCGCCACGACCTGTATCGGATAGGCATACAACATATGGGATGCGACAGGGGCTGGATGATGAACAAGAAATGATATCACCGTTCAACAGGAGAGGACACAAAGCATACGAGTCATCGGTTCCTGATTCAGATATATCATTTGTGAGCAGTGGAAGACCAAGTATTGATCGAATATTCCCTTCGATGTATAACATTGAAGATCTAGACACTAGTATGAGTAGCGGAATTCCCGCCGGCAGGCTTTCAGATTTTGATGCAAGAAGCAGCTTTGCTTCATCCTATTCTGGAGGAGGAGGACCAAAGTCAATTGACATGTCTTCTCCTTTGGATAACTATTCATTCAACTCTCAAGGCAGTGGTGGTGCGCTTTCTTCATCAAGGCTATCTGATGGCGGAGATGAAGTCGAGGCAGAGATGAGAAGGCTTAAGCTTGAACTCAAACAAACTATGGAAATGTACAGTTCAGCTTGTAAGGAAGCACTCAATGCCAAACAGAAGGCAATAGAACTTCAACGTTGGAAATCCGAAGAAGAAAAGAAATTGGAAGAGGCAAGAGAAGGTGAAGGAGCAGCTATGGCTATGGTAGAGTTGGAGCAAGAAAAGTGTAAAGCTGCACTCAAGGCAGCGGAAGCGTCTCAGAGAATCGCAACGTTGGAAGCACAAAAGCGAATGAACGTAGAAAGAAAAAGCGAAATGGAAGCAAGTCAGAGGAGAAAAGCTGACGATTCTTTTAATCCAATGCATAGCACTGCTAGATATAGAAGATACAGTATTGAGGAAATTGAAGATGCGACACAAAGGTTTTCAGACAGTCTCAAAATTGGTGAAGGAGGGTATGGTCCTGTTTTCAGATGTGAACTTGATCATACGCAGGTTGCTATCAAAGTGTTGAAATCAGATGCAGCTCAAGGAAGGGCACAATTTAATCAGGAAGTTGAAGTTTTGAGTTGCATAAGACATCCAAATATGGTGCTTCTGTTAGGAGCATGTCCTGAATTTGGCTGTATAGTGTATGAGTACATGGCTAATGGAAGTTTGGATGATTGTTTGTTCAGGAGAGGAAAGTCACCCCCTCTTCCTTGGCAGTTGCGATTTCAAATTGCTGCTGAGATAGCCACTGGACTCCTTTTCCTTCACCAGACTAAACCTGAACCGATTGTGCACCGTGACTTGAAACCTGGAAACATTTTGCTTGACAGAAACTATGTGAGCAAGATTGGTGATGTTGGTTTGGCAAGGCTTGTTCCTCCTTCTGTTCAAGATACTGTCACTCAGTATCGCATGACTTCGACTGCTGGAACTTTTTGTTACATTGACCCTGAGTACCAGCAAACCGGCATGCTTGGTATCAAATCTGATATCTACTCACTTGGAATCATGCTTTTACAAATGATTACCGCCAAGCCTCCAATGGGTTTGACTCATCATGTTGGTAGATCTATTGAAAAGGGAACTTTTCATGACATGCTTGATCCTGCTGTTCAGGACTGGCCTGTTGAACACGCCTTGCATTTTGCCAAACTTTCCCTTCAGTGTGCAGAAATGAGGAGAAAAGATAGACCCGATCTTGGAAAAGTTGTGCTTCCTGAGCTCAACAAACTCAGAATATTCGCCGAAGAAAACATGCCTATGATGATGTTTAGAGGCGGTAGTGCAGCATTCAATCCCAGAAGTACCAATTATTTCTTGAATTCCACCGCTTCCACAAATCAAGACATTATGAGTGAATCAGATTCTTTGTCTGGCATCTCCGGATACGAAAGCCGTTCAAGCACATCATCATTGGGGAGACTGTAA 2448 0.4289 MSRLNSEKKLGAGRVVAVAIENNKTSQHAAKWAVENLLPKDQCLYLIHVKQKINSSSSVSSSSSNSDINDDTFDSESKDLFDSFRVFCNRKSIQCREVLLEDADISKALIDCISTHCIELLVLGASSRGGIVRRFRTTDVPTTVSKAAPTFCTVYIISKGKISTVRSATAPIPKPPAPMSAPMIAPPTPSRSQQFQQQYAMPTRSPERSDPQLSRNYPPRPVSDRHTTYGMRQGLDDEQEMISPFNRRGHKAYESSVPDSDISFVSSGRPSIDRIFPSMYNIEDLDTSMSSGIPAGRLSDFDARSSFASSYSGGGGPKSIDMSSPLDNYSFNSQGSGGALSSSRLSDGGDEVEAEMRRLKLELKQTMEMYSSACKEALNAKQKAIELQRWKSEEEKKLEEAREGEGAAMAMVELEQEKCKAALKAAEASQRIATLEAQKRMNVERKSEMEASQRRKADDSFNPMHSTARYRRYSIEEIEDATQRFSDSLKIGEGGYGPVFRCELDHTQVAIKVLKSDAAQGRAQFNQEVEVLSCIRHPNMVLLLGACPEFGCIVYEYMANGSLDDCLFRRGKSPPLPWQLRFQIAAEIATGLLFLHQTKPEPIVHRDLKPGNILLDRNYVSKIGDVGLARLVPPSVQDTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQMITAKPPMGLTHHVGRSIEKGTFHDMLDPAVQDWPVEHALHFAKLSLQCAEMRRKDRPDLGKVVLPELNKLRIFAEENMPMMMFRGGSAAFNPRSTNYFLNSTASTNQDIMSESDSLSGISGYESRSSTSSLGRL 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00040 815 MobiDBLite consensus disorder prediction 443 462 - -
Vivi4g00040 815 Coils Coil 349 369 - -
Vivi4g00040 815 Gene3D HUPs 14 157 IPR014729 -
Vivi4g00040 815 ProSiteProfiles Protein kinase domain profile. 485 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00040 815 CDD STK_N 15 160 - -
Vivi4g00040 815 MobiDBLite consensus disorder prediction 307 343 - -
Vivi4g00040 815 Pfam Protein kinase domain 488 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00040 815 PANTHER OS02G0152300 PROTEIN 15 770 - -
Vivi4g00040 815 FunFam U-box domain-containing protein 51 558 758 - -
Vivi4g00040 815 SUPERFAMILY Protein kinase-like (PK-like) 460 744 IPR011009 -
Vivi4g00040 815 Pfam Universal stress protein family 14 149 IPR006016 -
Vivi4g00040 815 Gene3D Phosphorylase Kinase; domain 1 454 557 - -
Vivi4g00040 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Vivi4g00040 815 MobiDBLite consensus disorder prediction 186 212 - -
Vivi4g00040 815 MobiDBLite consensus disorder prediction 791 815 - -
Vivi4g00040 815 MobiDBLite consensus disorder prediction 175 237 - -
Vivi4g00040 815 MobiDBLite consensus disorder prediction 443 463 - -
Vivi4g00040 815 MobiDBLite consensus disorder prediction 307 351 - -
Vivi4g00040 815 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 460 557 - -
Vivi4g00040 815 SMART serkin_6 485 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00040 815 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 144 - -
Vivi4g00040 815 Gene3D Transferase(Phosphotransferase) domain 1 558 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00040 Vivi-Chr4 294774 298229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00040 1 766 Receptor kinase-like Gene Family AT1G78940 54.026 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi4g00040 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00040 - - gmx:100803837 1032.71