Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00026 ATGGGGAGAAAATGCTCACATTGTGGAAACATAGGTCATAATTCAAGAACTTGTAATACTTTAAGAGGAAGTGGTAACAATTTTCTTGGAGTTAGACTCTTTGGTGTTCAACTTGATTTATCATCTTCATGTGTTTCCATGAAAAAGAGTTTTAGCATGGATTCTTTTCCTACTTCATCTTCTTCTCCAACTTCTTCATTCTCTTCTTCAAGATTAATCATTGACGATAGAATTTCTAAGGGTTATCTCTCTGATGGTCTCATCGTTCGAACACAAGAAAGAAAGAAAGGAGTTCCTTGGACAGAAGAAGAGCATAGAAAATTTCTTGTTGGACTTGAGAAGCTAGGAAAAGGAGATTGGAGAGGTATCTCAAGAAGCTATGTGACAACAAGAACACCAACACAAGTTGCAAGTCATGCTCAAAAGTACTTTATTAGACTTTCAACTTTGAATAAGAAGAAGAGACGATCAAGTCTCTTTGACATGGTTGGTAGCATCAACACAAATAGAACGGTTAATTCAATCAACAGGTGTAAAAAGCATGATGATGAAGGTGAGAAAGATGCAACTATGTCACTTCTAATAACTTCATTTCAACAACAAGAAACAAAATCAACTCAAGTGGAAGATTGTGAAGAAGAAGAAGAACATGAAGATGTGCCTAATTGGTTACATCCTCTAACAAAATCTTTGAATATGACATTGGTGATGCCAAATTCTTCAAATGCAACAGCATCACCTGATCTTGAGCTTACTCTTGCAGTTCCCAAGTCTAACAATATGGAACAAGATAAAACATCCAATTCTTCTTTCTTCAATGGTCCAATTAGTGTCACTTAA 840 0.356 MGRKCSHCGNIGHNSRTCNTLRGSGNNFLGVRLFGVQLDLSSSCVSMKKSFSMDSFPTSSSSPTSSFSSSRLIIDDRISKGYLSDGLIVRTQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKYFIRLSTLNKKKRRSSLFDMVGSINTNRTVNSINRCKKHDDEGEKDATMSLLITSFQQQETKSTQVEDCEEEEEHEDVPNWLHPLTKSLNMTLVMPNSSNATASPDLELTLAVPKSNNMEQDKTSNSSFFNGPISVT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00026 279 MobiDBLite consensus disorder prediction 258 279 - -
Vivi4g00026 279 SUPERFAMILY Homeodomain-like 93 148 IPR009057 -
Vivi4g00026 279 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 146 IPR006447 GO:0003677
Vivi4g00026 279 CDD SANT 99 144 IPR001005 -
Vivi4g00026 279 PANTHER TRANSCRIPTION FACTOR KUA1 3 246 - -
Vivi4g00026 279 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Vivi4g00026 279 Gene3D - 98 150 - -
Vivi4g00026 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Vivi4g00026 279 FunFam transcription factor MYB1R1 98 149 - -
Vivi4g00026 279 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Vivi4g00026 279 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Vivi4g00026 279 SMART sant 96 146 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00026 Vivi-Chr4 219491 220879 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi4g00026 Myb_DNA-binding 8.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00026 - - qsa:O6P43_007819 270.011